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Sample name
This genome ( 269) data is not available.
Please contact bs.ngs@cj.net for any inquires.
About Strain
Taxon name
Taxon name identified by EzBioCloud DB
Strain name
K96243
Taxonomy
Original label
- For public genomes, this is the original name associated with the project in the database of origin (e.g. Genbank).
- For service genomes, this is the name that the user assigned to this project.
- For public genomes, this is the original name associated with the project in the database of origin (e.g. Genbank).
- For service genomes, this is the name that the user assigned to this project.
Burkholderia pseudomallei K96243
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Strain property
-
Source
Clinical (34-year-old female diabetic patient ) -
Biosample
-
Geographical origin
Khon Kaen hospital -
Year
About Genome
Status
This data's quality control status
Redundant project
DB accession number
- For public genomes, this is the assembly accession from NCBI.
- For service genomes, this is the genome accession from CJ Bioscience's "genome service" DB.
- For public genomes, this is the assembly accession from NCBI.
- For service genomes, this is the genome accession from CJ Bioscience's "genome service" DB.
Sequencing depth of coverage
-
Assembly type
One of four possible assembly types:
- COMPLETE
- CHROMOSOME
- SCAFFOLD
- CONTIG
One of four possible assembly types:
- COMPLETE
- CHROMOSOME
- SCAFFOLD
- CONTIG
COMPLETE
No. of contigs
2
Genome size (bp)
7,247,547
N50 (bp)
4,074,542
GC content
68.1%
No. of CDSs
5,942
Mean of CDS length (s.d) (bp)
Average CDS length (bp) and standard deviation (s.d)
1,024.2 (907.3)
Median of CDS length (bp)
Median of CDS length
882
Mean length of intergenic region (s.d.)
Average intergenic region length (bp) and standard deviation (s.d)
222.5 (253.1)
No. of rRNA genes
12
No. of tRNA genes
60
Coverage checked by Bacterial Core Genes
Bacterial Core Genes coverage
100.0%
Contamination checked by ContEst16S
ContEst16S result
This genome is not contaminated
Judgement
Evidence
Taxonomic identification of the extracted fragments
All 16S rRNA fragments found in the genome were identified using EzBioCloud DB. Only the top hit with the highest similarity value is displayed for each fragment.
| Fragment | Length(bp) | Top hit | Similarity (%) | Differences / Compared (bp) | Taxonomy | Sequence |
|---|
Pairwise similarities between the extracted fragments
Pairwise similarities between the extracted fragments
Similarity values calculated for all pairs of 16S rRNA fragments found in the genome.
Contamination check process
- Pairwise similarity values are checked for values below 95%.
- If a pair of 16S rRNA fragments are found to have less than 95% similarity, each fragment is checked against the EzBioCloud DB for at least 97% similarity with another species.
- If the matched species for those fragments differ at the genus level, the genome is confirmed for contamination.
Pairwise similarities between the extracted fragments
Similarity values calculated for all pairs of 16S rRNA fragments found in the genome.
Contamination check process
- Pairwise similarity values are checked for values below 95%.
- If a pair of 16S rRNA fragments are found to have less than 95% similarity, each fragment is checked against the EzBioCloud DB for at least 97% similarity with another species.
- If the matched species for those fragments differ at the genus level, the genome is confirmed for contamination.
Maximum likehood phylogenetic tree
Contigs
CDSs
Genome Browser
Search Feature
Results:
Primer Tool
Primer Sequence:
Mismatch Limit:
Results:
Sequence Search Results
Query Gene:
Results:
title
msg
buttons
Modify Genome
Export Genome
Target Genome: N/A
File Name:
Open Track
Target Genome: N/A
Type:
Feature
Core Attributes:
Optional Attributes:
| Key | Value |
|---|---|
| Feature Name | GCF_000006745.1_02690 |
| Gene | LSU_rRNA_bacteria |
| Product | Protein MioC homolog |
| Note | Probable electron transporter required for biotin synthase activity; Belongs to the flavodoxin family. MioC subfamily; Contains 1 flavodoxin-like domain. |
Feature
Core Attributes:
Optional Attributes:
| Key | Value |
|---|---|
| Feature Name | GCF_000006745.1_02690 |
| Gene | LSU_rRNA_bacteria |
| Product | Protein MioC homolog |
| Note | Probable electron transporter required for biotin synthase activity; Belongs to the flavodoxin family. MioC subfamily; Contains 1 flavodoxin-like domain. |
EggNog/COG
BLAST
Query Title:
DNA or Protein Sequence (Paste your sequence below)
Blast Type
Database
EzBioCloud's Genome BLAST Service
Please sign up or log in to use EzBioCloud's Genome BLAST Service.
