MTP Taxonomy
This complete taxonomic hierarchy of Bacteria and Archaea was manually constructed by the EzBioCloud team using numerous maximum likelihood phylogenetic trees based on 16S sequences.
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Alicyclobacillus acidocaldarius subsp. acidocaldarius 
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Alicyclobacillus acidocaldarius subsp. rittmannii
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Alicyclobacillus hesperidum
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Alicyclobacillus sacchari
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Alkalibacillus salilacus
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Alkalibacillus almallahensis
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Alkalibacillus halophilus
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Anoxybacillus contaminans
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Anoxybacillus voinovskiensis
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Anoxybacillus amylolyticus
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Anoxybacillus flavithermus subsp. flavithermus
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Anoxybacillus flavithermus subsp. yunnanensis
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Anoxybacillus mongoliensis
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Bacillus luciferensis
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Bacillus acidiceler
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Bacillus altitudinis
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Bacillus xiamenensis
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Bacillus amyloliquefaciens
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Bacillus siamensis
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Bacillus velezensis
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Bacillus atrophaeus
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Bacillus vallismortis
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Bacillus cereus
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Bacillus anthracis
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Bacillus pseudomycoides
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Bacillus thuringiensis
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Bacillus toyonensis
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CM000739_s
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JH792182_s
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JH792233_s
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JH792383_s
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JYPH_s
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LABL_s
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Bacillus mycoides
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Bacillus weihenstephanensis
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Bacillus megaterium
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Bacillus aryabhattai
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Bacillus pumilus
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Bacillus australimaris
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Bacillus safensis
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Bacillus zhangzhouensis
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Bacillus badius
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Bacillus encimensis
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Bacillus jeotgali
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Bacillus boroniphilus
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Bacillus selenatarsenatis
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Bacillus thioparans
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Bacillus muralis
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Bacillus butanolivorans
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Bacillus simplex
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Brevibacterium frigoritolerans
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Bacillus indicus
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Bacillus cibi
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Bacillus huizhouensis
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Bacillus cihuensis
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Bacillus endophyticus
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Bacillus filamentosus
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Bacillus songklensis
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Bacillus fengqiuensis
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Bacillus thaonhiensis
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Bacillus licheniformis
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Bacillus paralicheniformis
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Bacillus glycinifermentans
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Bacillus gottheilii
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Bacillus mesophilum
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Bacillus thermolactis
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Bacillus kokeshiiformis
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Bacillus mojavensis
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Brevibacterium halotolerans
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Bacillus novalis
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Bacillus vireti
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Bacillus subtilis subsp. subtilis
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Bacillus subtilis subsp. inaquosorum
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Bacillus subtilis subsp. spizizenii
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Bacillus tequilensis
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Bacillus clarkii
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Bacillus polygoni
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Bacillus daqingensis
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Bacillus luteus
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Bacillus oshimensis
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Bacillus lehensis
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Bacillus hunanensis
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Bacillus murimartini
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Bacillus plakortidis
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Fictibacillus nanhaiensis
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Fictibacillus phosphorivorans
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Geobacillus thermocatenulatus
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Geobacillus gargensis
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Geobacillus kaustophilus
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Geobacillus thermoleovorans
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Geobacillus vulcani
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Geobacillus subterraneus subsp. subterraneus
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Geobacillus subterraneus subsp. aromaticivorans
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Geobacillus thermodenitrificans subsp. thermodenitrificans
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Geobacillus thermodenitrificans subsp. calidus
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Gracilibacillus saliphilus
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Gracilibacillus thailandensis
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Halobacillus halophilus
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Halobacillus alkaliphilus
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Marinococcus halophilus
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Marinococcus luteus
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Marinococcus tarijensis
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Oceanobacillus oncorhynchi subsp. oncorhynchi
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Oceanobacillus oncorhynchi subsp. incaldanensis
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Salisediminibacterium halotolerans
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Salisediminibacterium haloalkalitolerans
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Terribacillus saccharophilus
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Terribacillus goriensis
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Virgibacillus alimentarius
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Virgibacillus campisalis
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Virgibacillus chiguensis
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Virgibacillus dokdonensis
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Virgibacillus salinus
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Virgibacillus litoralis
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Virgibacillus marismortui
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Virgibacillus olivae
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Virgibacillus salarius
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Exiguobacterium acetylicum
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Exiguobacterium indicum
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Exiguobacterium enclense
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Exiguobacterium aestuarii
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Exiguobacterium marinum
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Exiguobacterium profundum
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Exiguobacterium himgiriensis
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Exiguobacterium alkaliphilum
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Exiguobacterium artemiae
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Exiguobacterium sibiricum
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Gemella haemolysans
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Gemella parahaemolysans
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Gemella taiwanensis
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Listeria rocourtiae
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Listeria cornellensis
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Listeria grandensis
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Listeria newyorkensis
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Listeria weihenstephanensis
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Listeria booriae
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Listeria riparia
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Listeria fleischmannii subsp. fleischmannii
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Listeria fleischmannii subsp. coloradensis
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Listeria monocytogenes
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Listeria innocua
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Listeria marthii
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Listeria ivanovii subsp. ivanovii
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Listeria ivanovii subsp. londoniensis
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Brevibacillus brevis
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Brevibacillus formosus
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Brevibacillus choshinensis
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Brevibacillus nitrificans
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Brevibacillus laterosporus
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CP007806_s
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Paenibacillus polymyxa
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Paenibacillus jamilae
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Paenibacillus peoriae
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Paenibacillus macquariensis subsp. macquariensis
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Paenibacillus antarcticus
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Paenibacillus macquariensis subsp. defensor
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Paenibacillus cineris
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Paenibacillus favisporus
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Paenibacillus rhizosphaerae
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Paenibacillus gorillae
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Paenibacillus radicis
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Paenibacillus massiliensis
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Paenibacillus panacisoli
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Paenibacillus tundrae
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Paenibacillus tylopili
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Jeotgalibacillus alimentarius
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Jeotgalibacillus malaysiensis
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Lysinibacillus composti
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Lysinibacillus alkaliphilus
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Lysinibacillus mangiferihumi
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Lysinibacillus sphaericus
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Planococcus citreus
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Planococcus rifietoensis
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Planococcus donghaensis
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Planococcus halocryophilus
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Viridibacillus arenosi
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Viridibacillus arvi
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Sporolactobacillus inulinus
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Sporolactobacillus terrae
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Sporolactobacillus nakayamae subsp. nakayamae
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Sporolactobacillus nakayamae subsp. racemicus
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Jeotgalicoccus aerolatus
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Jeotgalicoccus halophilus
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Jeotgalicoccus marinus
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Jeotgalicoccus huakuii
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Macrococcus bovicus
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Macrococcus brunensis
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Salinicoccus jeotgali
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Salinicoccus salsiraiae
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Staphylococcus hyicus
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Staphylococcus agnetis
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Staphylococcus aureus subsp. aureus
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Staphylococcus argenteus
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Staphylococcus aureus subsp. anaerobius
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Staphylococcus schweitzeri
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Staphylococcus simiae
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Staphylococcus saprophyticus subsp. saprophyticus
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Staphylococcus saprophyticus subsp. bovis
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Staphylococcus capitis subsp. capitis
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Staphylococcus capitis subsp. urealyticus
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Staphylococcus caprae
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Staphylococcus saccharolyticus
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Staphylococcus carnosus subsp. carnosus
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Staphylococcus carnosus subsp. utilis
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Staphylococcus condimenti
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Staphylococcus piscifermentans
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Staphylococcus intermedius
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Staphylococcus delphini
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Staphylococcus pseudintermedius
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Staphylococcus cohnii subsp. cohnii
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Staphylococcus cohnii subsp. urealyticus
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Staphylococcus nepalensis
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Staphylococcus equorum subsp. equorum
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Staphylococcus equorum subsp. linens
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Staphylococcus hominis subsp. hominis
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Staphylococcus hominis subsp. novobiosepticus
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Staphylococcus muscae
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Staphylococcus rostri
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Staphylococcus microti
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Staphylococcus petrasii subsp. petrasii
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Staphylococcus petrasii subsp. croceilyticus
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Staphylococcus petrasii subsp. jettensis
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Staphylococcus petrasii subsp. pragensis
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Staphylococcus schleiferi subsp. schleiferi
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Staphylococcus schleiferi subsp. coagulans
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Staphylococcus sciuri subsp. sciuri
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Staphylococcus sciuri subsp. carnaticus
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Staphylococcus sciuri subsp. rodentium
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Staphylococcus succinus subsp. succinus
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Staphylococcus succinus subsp. casei
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Baia soyae
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Croceifilum oryzae
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Laceyella sacchari
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Laceyella sediminis
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Laceyella tengchongensis
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Mechercharimyces asporophorigenens
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Mechercharimyces mesophilus
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Aerococcus viridans
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Aerococcus urinaeequi
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Globicatella sanguinis
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Globicatella sulfidifaciens
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Granulicatella adiacens
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JVNU_s
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Alkalibacterium indicireducens
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Alkalibacterium pelagium
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Alkalibacterium thalassium
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Alkalibacterium putridalgicola
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Alkalibacterium subtropicum
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Carnobacterium alterfunditum
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Carnobacterium pleistocenium
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Carnobacterium funditum
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Carnobacterium iners
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Carnobacterium inhibens subsp. inhibens
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Carnobacterium inhibens subsp. gilichinskyi
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Marinilactibacillus psychrotolerans
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Marinilactibacillus piezotolerans
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Trichococcus collinsii
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Trichococcus patagoniensis
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Trichococcus flocculiformis
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Trichococcus pasteurii
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Enterococcus avium
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Enterococcus raffinosus
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Enterococcus haemoperoxidus
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Enterococcus caccae
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Enterococcus moraviensis
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Enterococcus plantarum
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Enterococcus quebecensis
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Enterococcus rotai
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Enterococcus silesiacus
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Enterococcus ureasiticus
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Enterococcus ureilyticus
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Enterococcus casseliflavus
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Enterococcus gallinarum
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Enterococcus malodoratus
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Enterococcus gilvus
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Enterococcus devriesei
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Enterococcus pseudoavium
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Enterococcus viikkiensis
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Enterococcus xiangfangensis
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Enterococcus durans
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Enterococcus faecium
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Enterococcus hirae
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Enterococcus lactis
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Enterococcus saccharolyticus subsp. saccharolyticus
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Enterococcus saccharolyticus subsp. taiwanensis
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Enterococcus thailandicus
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Enterococcus sanguinicola
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Tetragenococcus halophilus subsp. halophilus
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Tetragenococcus halophilus subsp. flandriensis
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Lactobacillus acidifarinae
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Lactobacillus zymae
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Lactobacillus helveticus
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Lactobacillus gallinarum
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Lactobacillus amylovorus
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Lactobacillus kitasatonis
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Lactobacillus aquaticus
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Lactobacillus uvarum
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Lactobacillus aviarius subsp. aviarius
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Lactobacillus aviarius subsp. araffinosus
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Lactobacillus backii
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Lactobacillus iwatensis
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Lactobacillus casei
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Lactobacillus paracasei subsp. paracasei
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Lactobacillus paracasei subsp. tolerans
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Lactobacillus collinoides
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Lactobacillus paracollinoides
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Lactobacillus coryniformis subsp. coryniformis
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Lactobacillus coryniformis subsp. torquens
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Lactobacillus farciminis
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Lactobacillus formosensis
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Lactobacillus delbrueckii subsp. delbrueckii
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Lactobacillus delbrueckii subsp. bulgaricus
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Lactobacillus delbrueckii subsp. indicus
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Lactobacillus delbrueckii subsp. jakobsenii
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Lactobacillus delbrueckii subsp. lactis
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Lactobacillus delbrueckii subsp. sunkii
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Lactobacillus plantarum subsp. plantarum
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Lactobacillus paraplantarum
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Lactobacillus pentosus
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Lactobacillus plantarum subsp. argentoratensis
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Lactobacillus jensenii
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Lactobacillus fornicalis
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Lactobacillus psittaci
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Lactobacillus fructivorans
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Lactobacillus homohiochii
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Lactobacillus sakei subsp. sakei
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Lactobacillus sakei subsp. carnosus
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Lactobacillus gasseri
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Lactobacillus taiwanensis
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Lactobacillus johnsonii
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Lactobacillus kefiranofaciens subsp. kefiranofaciens
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Lactobacillus kefiranofaciens subsp. kefirgranum
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Lactobacillus kimchii
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Lactobacillus paralimentarius
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Lactobacillus odoratitofui
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Lactobacillus similis
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Lactobacillus otakiensis
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Lactobacillus sunkii
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Pediococcus acidilactici
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Pediococcus lolii
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Leuconostoc pseudomesenteroides
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JDVA_s
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Leuconostoc citreum
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Leuconostoc holzapfelii
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Leuconostoc gelidum subsp. gelidum
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Leuconostoc gelidum subsp. aenigmaticum
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Leuconostoc gelidum subsp. gasicomitatum
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Leuconostoc mesenteroides subsp. mesenteroides
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Leuconostoc mesenteroides subsp. cremoris
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Leuconostoc mesenteroides subsp. dextranicum
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Leuconostoc mesenteroides subsp. suionicum
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Weissella hellenica
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Weissella bombi
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Weissella ghanensis
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Weissella fabaria
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Lactococcus garvieae
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AFCD_s
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AMFD_s
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AMQS_s
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Lactococcus lactis subsp. lactis
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Lactococcus lactis subsp. cremoris
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Lactococcus lactis subsp. hordniae
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Lactococcus lactis subsp. tructae
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Streptococcus pneumoniae
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CKQD_s
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CKYA_s
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JVYO_s
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Streptococcus pseudopneumoniae
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CRPU_s
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JVWC_s
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AQTU_s
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ASZZ_s
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Streptococcus mitis
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AFNM_s
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ASXA_s
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Streptococcus tigurinus
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Streptococcus salivarius subsp. salivarius
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Streptococcus salivarius subsp. thermophilus
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Streptococcus vestibularis
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Streptococcus gordonii
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JUTP_s
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JWEZ_s
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Streptococcus anginosus subsp. anginosus
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Streptococcus anginosus subsp. whileyi
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Streptococcus constellatus subsp. constellatus
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Streptococcus constellatus subsp. pharyngis
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Streptococcus constellatus subsp. viborgensis
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Streptococcus dysgalactiae subsp. dysgalactiae
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Streptococcus dysgalactiae subsp. equisimilis
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Streptococcus equi subsp. equi
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Streptococcus equi subsp. ruminatorum
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Streptococcus equi subsp. zooepidemicus
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Streptococcus equinus
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Streptococcus infantarius
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Streptococcus lutetiensis
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Streptococcus gallolyticus subsp. gallolyticus
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Streptococcus gallolyticus subsp. macedonicus
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Streptococcus gallolyticus subsp. pasteurianus
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Streptococcus phocae subsp. phocae
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Streptococcus phocae subsp. salmonis
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Caldicoprobacter oshimai
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Caldicoprobacter faecalis
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Caloramator indicus
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Thermobrachium celere
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Clostridium beijerinckii
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Clostridium diolis
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Clostridium estertheticum subsp. estertheticum
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Clostridium estertheticum subsp. laramiense
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Clostridium aurantibutyricum
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Clostridium roseum
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Clostridium botulinum
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Clostridium sporogenes
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Eubacterium combesii
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Clostridium scatologenes
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Clostridium carboxidivorans
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Clostridium drakei
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Clostridium haemolyticum
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LHYY_s
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CP002410_s
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Clostridium subterminale
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Clostridium sulfidigenes
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Clostridium thiosulfatireducens
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Eubacterium limosum
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Eubacterium callanderi
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Blautia coccoides
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Blautia producta
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Clostridium aerotolerans
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Clostridium xylanolyticum
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Clostridium indolis
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Clostridium methoxybenzovorans
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Desulfotomaculum guttoideum
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Fusobacterium naviforme
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Moryella indoligenes
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Abyssivirga alkaniphila
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Vallitalea guaymasensis
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Desulfotomaculum nigrificans
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Desulfotomaculum carboxydivorans
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Desulfotomaculum thermobenzoicum subsp. thermobenzoicum
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Desulfotomaculum thermobenzoicum subsp. thermosyntrophicum
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Eubacterium yurii subsp. yurii
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Eubacterium yurii subsp. margaretiae
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Eubacterium yurii subsp. schtitka
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Paraclostridium benzoelyticum
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Paraclostridium bifermentans
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Peptostreptococcus stomatis
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JRNB_s
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Anaerobranca horikoshii
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Anaerobranca zavarzinii
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Clostridium stercorarium subsp. stercorarium
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Clostridium stercorarium subsp. leptospartum
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Clostridium stercorarium subsp. thermolacticum
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Syntrophomonas wolfei subsp. wolfei
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Syntrophomonas wolfei subsp. saponavida
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Syntrophomonas wolfei subsp. methylbutyratica
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Halanaerobium saccharolyticum subsp. saccharolyticum
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Halanaerobium kushneri
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Halanaerobium saccharolyticum subsp. senegalense
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Thermaerobacter nagasakiensis
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Thermaerobacter subterraneus
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Caldanaerobacter subterraneus subsp. subterraneus
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Caldanaerobacter subterraneus subsp. pacificus
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Caldanaerobacter subterraneus subsp. tengcongensis
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Caldanaerobacter subterraneus subsp. yonseiensis
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Thermoanaerobacter brockii subsp. brockii
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Thermoanaerobacter brockii subsp. finnii
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Thermoanaerobacter brockii subsp. lactiethylicus
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Thermoanaerobacter pseudethanolicus
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Thermoanaerobacter mathranii subsp. mathranii
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Thermoanaerobacter mathranii subsp. alimentarius
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Thermoanaerobacterium thermosulfurigenes
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Thermoanaerobacterium xylanolyticum
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Selenomonas ruminantium subsp. ruminantium
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Selenomonas ruminantium subsp. lactilytica
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Veillonella ratti
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Veillonella seminalis
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Peptoniphilus senegalensis
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Peptoniphilus tyrrelliae
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