Taxonomy

This complete taxonomic hierarchy of Bacteria and Archaea was manually constructed by the EzBioCloud team using numerous maximum likelihood phylogenetic trees based on 16S sequences.
Acetobacteraceae (ex Henrici 1939) Gillis and De Ley 1980
Acetobacter Beijerinck 1898
Acetobacter aceti (Pasteur 1864) Beijerinck 1898
Acetobacter cerevisiae Cleenwerck et al. 2002
Acetobacter cibinongensis Lisdiyanti et al. 2002
Acetobacter estunensis (Carr 1958) Lisdiyanti et al. 2001
Acetobacter fabarum Cleenwerck et al. 2008
Acetobacter farinalis Tanasupawat et al. 2011
Acetobacter ghanensis Cleenwerck et al. 2007
Acetobacter indonesiensis Lisdiyanti et al. 2001
Acetobacter lambici Spitaels et al. 2014
Acetobacter lovaniensis (Frateur 1950) Lisdiyanti et al. 2001
Acetobacter malorum Cleenwerck et al. 2002
Acetobacter musti Ferrer et al. 2016
Acetobacter nitrogenifigens Dutta and Gachhui 2006
Acetobacter oeni Silva et al. 2006
Acetobacter okinawensis Iino et al. 2013
Acetobacter orientalis Lisdiyanti et al. 2002
Acetobacter orleanensis (Henneberg 1906) Lisdiyanti et al. 2001
Acetobacter oryzifermentans Kim et al. 2019
Acetobacter papayae Iino et al. 2013
Acetobacter pasteurianus (Hansen 1879) Beijerinck and Folpmers 1916
Acetobacter peroxydans Visser't Hooft 1925
Acetobacter persici Iino et al. 2013
Acetobacter pomorum Sokollek et al. 1998
Acetobacter senegalensis Ndoye et al. 2007
Acetobacter sicerae Li et al. 2014
Acetobacter suratthaniensis Pitiwittayakul et al. 2016
Acetobacter syzygii Lisdiyanti et al. 2002
Acetobacter thailandicus Pitiwittayakul et al. 2016
Acetobacter tropicalis Lisdiyanti et al. 2001
Acidibrevibacterium Muhadesi et al. 2999
Acidibrevibacterium fodinaquatile Muhadesi et al. 2999
Acidicaldus Johnson et al. 2006
Acidicaldus organivorans Johnson et al. 2006
Acidiphilium Harrison 1981
Acidiphilium acidophilum (Harrison 1983) Hiraishi et al. 1998
Acidiphilium angustum Wichlacz et al. 1986
Acidiphilium cryptum Harrison 1981
Acidiphilium iwatense Okamura et al. 2015
Acidiphilium multivorum Wakao et al. 1995
Acidiphilium organovorum Lobos et al. 1986
Acidiphilium rubrum Wichlacz et al. 1986
Acidisoma Belova et al. 2009
Acidisoma sibiricum Belova et al. 2009
Acidisoma tundrae Belova et al. 2009
Acidisphaera Hiraishi et al. 2000
Acidisphaera rubrifaciens Hiraishi et al. 2000
Acidocella Kishimoto et al. 1996
Acidocella aluminiidurans Kimoto et al. 2010
Acidocella aminolytica (Kishimoto et al. 1994) Kishimoto et al. 1996
Acidocella aquatica Okamoto et al. 2017
Acidocella aromatica Jones et al. 2013
Acidocella facilis (Wichlacz et al. 1986) Kishimoto et al. 1996
Acidomonas Urakami et al. 1989
Acidomonas methanolica (Uhlig et al. 1986) Urakami et al. 1989
Ameyamaea Yukphan et al. 2010
Ameyamaea chiangmaiensis Yukphan et al. 2010
Asaia Yamada et al. 2000
Asaia astilbis Suzuki et al. 2012
Asaia bogorensis Yamada et al. 2000
Asaia krungthepensis Yukphan et al. 2004
Asaia lannensis Malimas et al. 2008
Asaia platycodi Suzuki et al. 2012
Asaia prunellae Suzuki et al. 2012
Asaia siamensis Katsura et al. 2001
Asaia spathodeae Kommanee et al. 2010
Belnapia Reddy et al. 2006
Belnapia moabensis Reddy et al. 2006
Belnapia rosea Jin et al. 2012
Belnapia soli Jin et al. 2013
Bombella Li et al. 2015
Bombella apis Yun et al. 2017
Bombella intestini Li et al. 2015
Caldovatus Habib et al. 2017
Caldovatus sediminis Habib et al. 2017
Commensalibacter Roh et al. 2008
Commensalibacter intestini Roh et al. 2008
Craurococcus Saitoh et al. 1998
Craurococcus roseus Saitoh et al. 1998
Crenalkalicoccus Ming et al. 2016
Crenalkalicoccus roseus Ming et al. 2016
Dankookia Kim et al. 2016
Dankookia rubra Kim et al. 2016
Elioraea Albuquerque et al. 2008
Elioraea tepidiphila Albuquerque et al. 2008
Endobacter Ramírez-Bahena et al. 2013
Endobacter medicaginis Ramírez-Bahena 2013
Gluconacetobacter Yamada et al. 1998
Gluconacetobacter aggeris Nishijima et al. 2013
Gluconacetobacter asukensis Tazato et al. 2012
Gluconacetobacter azotocaptans Fuentes-Ramírez et al. 2001
Gluconacetobacter diazotrophicus (Gillis et al. 1989) Yamada et al. 1998
Gluconacetobacter johannae Fuentes-Ramírez et al. 2001
Gluconacetobacter liquefaciens (Asai 1935) Yamada et al. 1998
Gluconacetobacter sacchari Franke et al. 1999
Gluconacetobacter takamatsuzukensis Nishijima et al. 2013
Gluconacetobacter tumulicola Tazato et al. 2012
Gluconacetobacter tumulisoli Nishijima et al. 2013
Nguyenibacter vanlangensis Thi Lan Vu et al. 2013
Gluconobacter Asai 1935
Gluconobacter albidus (ex Kondo and Ameyama 1958) Yukphan et al. 2005
Gluconobacter cerevisiae Spitaels et al. 2014
Gluconobacter cerinus (ex Asai 1935) Yamada and Akita 1984
Gluconobacter frateurii Mason and Claus 1989
Gluconobacter japonicus Malimas et al. 2009
Gluconobacter kanchanaburiensis Malimas et al. 2009
Gluconobacter kondonii Malimas et al. 2008
Gluconobacter morbifer Roh et al. 2008
Gluconobacter oxydans (Henneberg 1897) De Ley 1961
Gluconobacter roseus (ex Asai 1935) Malimas et al. 2008
Gluconobacter sphaericus (Ameyama 1975) Malimas et al. 2008
Gluconobacter thailandicus Tanasupawat et al. 2005
Gluconobacter wancherniae Yukphan et al. 2010
Granulibacter Greenberg et al. 2006
Granulibacter bethesdensis Greenberg et al. 2006
Humitalea Margesin and Zhang 2013
Humitalea rosea Margesin and Zhang 2013
Komagataeibacter Yamada et al. 2013
Gluconacetobacter entanii Schüller et al. 2000
Komagataeibacter cocois Liu et al. 2018
Komagataeibacter europaeus (Sievers et al. 1992) Yamada et al. 2013
Komagataeibacter hansenii (Gosselé et al. 1983) Yamada et al. 2013
Komagataeibacter intermedius (Boesch et al. 1998) Yamada et al. 2013
Komagataeibacter kakiaceti (Iino et al. 2012) Yamada 2014
Komagataeibacter maltaceti (Slapšak et al. 2013) Yamada 2014
Komagataeibacter medellinensis (Castro et al. 2013) Yamada 2014
Komagataeibacter nataicola (Lisdiyanti et al. 2006) Yamada et al. 2013
Komagataeibacter oboediens (Sokollek et al. 1998) Yamada et al. 2013
Komagataeibacter pomaceti Škraban et al. 2019
Komagataeibacter rhaeticus (Dellaglio et al. 2005) Yamada et al. 2013
Komagataeibacter saccharivorans (Lisdiyanti et al. 2006) Yamada et al. 2013
Komagataeibacter sucrofermentans (Toyosaki et al. 1996) Yamada et al. 2013
Komagataeibacter swingsii (Dellaglio et al. 2005) Yamada et al. 2013
Komagataeibacter xylinus (Brown 1886) Yamada et al. 2013
Kozakia Lisdiyanti et al. 2002
Kozakia baliensis Lisdiyanti et al. 2002
Neoasaia Yukphan et al. 2006
Neoasaia chiangmaiensis Yukphan et al. 2006
Neokomagataea Yukphan et al. 2011
Neokomagataea tanensis Yukphan et al. 2011
Neokomagataea thailandica Yukphan et al. 2011
Paracraurococcus Saitoh et al. 1998
Paracraurococcus ruber Saitoh et al. 1998
Rhodopila Imhoff et al. 1984
Rhodopila globiformis (Pfennig 1974) Imhoff et al. 1984
Rhodovarius Kämpfer et al. 2004
Rhodovarius lipocyclicus Kämpfer et al. 2004
Rhodovastum Okamura et al. 2018
Rhodovastum atsumiense Okamura et al. 2018
Roseicella Khan et al. 2019
Roseicella frigidaeris Khan et al. 2019
Roseococcus Yurkov et al. 1994
Roseococcus suduntuyensis Boldareva et al. 2009
Roseococcus thiosulfatophilus Yurkov et al. 1994
Roseomonas Rihs et al. 1998
Roseomonas aceris Tonouchi and Tazawa 2014
Roseomonas aeriglobus Lee and Jeon 2018
Roseomonas aerilata Yoo et al. 2008
Roseomonas aerofrigidensis Hyeon and Jeon 2017
Roseomonas aerophila Kim et al. 2013
Roseomonas aestuarii Venkata Ramana et al. 2010
Roseomonas alkaliterrae Dong et al. 2014
Roseomonas aquatica Gallego et al. 2006
Roseomonas arctica Qiu et al. 2016
Roseomonas arcticisoli Kim et al. 2016
Roseomonas cervicalis Rihs et al. 1998
Roseomonas deserti Subhash and Lee 2018
Roseomonas eburnea Wang et al. 2016
Roseomonas elaeocarpi Damtab et al. 2016
Roseomonas fluminis Ko et al. 2018
Roseomonas frigidaquae Kim et al. 2009
Roseomonas gilardii Rihs et al. 1998
Roseomonas globiformis Fang et al. 2018
Roseomonas hibiscisoli Yan et al. 2017
Roseomonas lacus Jiang et al. 2006
Roseomonas ludipueritiae (Kämpfer et al. 2003) Sánchez-Porro et al. 2009
Roseomonas mucosa Han et al. 2003
Roseomonas musae Nutaratat et al. 2017
Roseomonas nepalensis Chaudhary and Kim 2017
Roseomonas oryzae Ramaprasad et al. 2015
Roseomonas oryzicola Chung et al. 2015
Roseomonas pecuniae Lopes et al. 2011
Roseomonas radiodurans Kim et al. 2018
Roseomonas rhizosphaerae Chen et al. 2014
Roseomonas riguiloci Baik et al. 2012
Roseomonas rosea (Kämpfer et al. 2003) Sánchez-Porro et al. 2009
Roseomonas rubra Subhash et al. 2016
Roseomonas sediminicola He et al. 2019
Roseomonas soli Kim and Ka 2014
Roseomonas stagni Furuhata et al. 2008
Roseomonas suffusca Subhash and Lee 2017
Roseomonas terrae Yoon et al. 2007
Roseomonas terricola Kim et al. 2017
Roseomonas tokyonensis Furuhata et al. 2014
Roseomonas vinacea Zhang et al. 2008
Roseomonas wenyumeiae Tian et al. 2999
Roseomonas wooponensis Lee et al. 2015
Rubritepida Alarico et al. 2002
Rubritepida flocculans Alarico et al. 2002
Saccharibacter Jojima et al. 2004
Saccharibacter floricola Jojima et al. 2004
Sediminicoccus Qu et al. 2014
Sediminicoccus rosea Qu et al. 2014
Siccirubricoccus Yang et al. 2017
Siccirubricoccus deserti Yang et al. 2017
Swaminathania Loganathan and Nair 2004
Swaminathania salitolerans Loganathan and Nair 2004
Swingsia Malimas et al. 2014
Swingsia samuiensis Malimas et al. 2014
Tanticharoenia Yukphan et al. 2008
Tanticharoenia aidae Vu et al. 2016
Tanticharoenia sakaeratensis Yukphan et al. 2008
Data type count
  • 0
    Genome
  • 0
    16S rRNA