Taxonomy

This complete taxonomic hierarchy of Bacteria and Archaea was manually constructed by the EzBioCloud team using numerous maximum likelihood phylogenetic trees based on 16S sequences.
Root;Bacteria;Proteobacteria;Gammaproteobacteria;Enterobacterales
Enterobacteriaceae Rahn 1937
AB064514_g
AB064514_s
AB083058_g
AB083058_s
AY999971_s
AF015258_g
AF015258_s
AF077607_g
AF077607_s
AF263559_g
AB013087_s
AF263559_s
AF286125_s
AF263560_g
AF263560_s
AF476106_g
AF476106_s
AY126632_g
AP018162_s
AY126632_s
AY126635_s
AY126636_s
AY126637_s
AY676882_g
AY676880_s
AY676882_s
AY676889_s
BAGV_g
BAGV_s
Baumannia Moran et al. 2003
AF465796_s
AF465797_s
AY676887_s
AY676891_s
AY676893_s
Baumannia cicadellinicola Moran et al. 2003
CP008985_s
CP011787_s
Blochmannia Sauer et al. 2000
AJ245592_s
AJ245595_s
AJ245596_s
Blochmannia americanus Wernegreen et al. 2010
Blochmannia castaneus Wernegreen et al. 2010
Blochmannia fellah de Souza et al. 2009
Blochmannia festinatus Wernegreen et al. 2003
Blochmannia floridanus Sauer et al. 2000
Blochmannia herculeanus Sauer et al. 2000
Blochmannia laevigatus Wernegreen et al. 2010
Blochmannia novaeboracensis Wernegreen et al. 2010
Blochmannia ocreatus Wernegreen et al. 2010
Blochmannia pennsylvanicus Degnan et al. 2005
Blochmannia rufipes Sauer et al. 2000
Blochmannia sansabeanus Wernegreen et al. 2010
Blochmannia sayi Wernegreen et al. 2010
Blochmannia schaefferi Wernegreen et al. 2010
Blochmannia ulcerosus Wernegreen et al. 2010
Blochmannia vafer Degnan et al. 2004
Blochmannia vicinus Wernegreen et al. 2010
Blochmanniella chromaiodes Williams and Wernegreen 2013
Buttiauxella Ferragut et al. 1982
Buttiauxella agrestis Ferragut et al. 1982
Buttiauxella brennerae Müller et al. 1996
Buttiauxella chrysanthemi Furlan et al. 2018
Buttiauxella ferragutiae Müller et al. 1996
Buttiauxella gaviniae Müller et al. 1996
Buttiauxella izardii Müller et al. 1996
Buttiauxella massiliensis Zgheib et al. 2022
Buttiauxella noackiae Müller et al. 1996
Buttiauxella warmboldiae Müller et al. 1996
VEXQ_s
Cedecea Grimont et al. 1981
Cedecea davisae Grimont et al. 1981
Cedecea neteri Farmer et al. 1983
Cedecea sulfonylureivorans Li et al. 2022
CP009451_s
CP009458_s
CP009459_s
CP011077_s
WJYK_s
Citrobacter Werkman and Gillen 1932
Cedecea lapagei Grimont et al. 1981
Citrobacter amalonaticus (Young et al. 1971) Brenner and Farmer 1982
Citrobacter arsenatis Wang et al. 2021
Citrobacter braakii Brenner et al. 1993
Citrobacter cronae Oberhettinger et al. 2020
Citrobacter europaeus Ribeiro et al. 2017
Citrobacter farmeri Brenner et al. 1993
Citrobacter freundii (Braak 1928) Werkman and Gillen 1932
Citrobacter gillenii Brenner et al. 2000
Citrobacter koseri Frederiksen 1970
Citrobacter meridianamericanus Furlan et al. 2023
Citrobacter murliniae Brenner et al. 2000
Citrobacter pasteurii Clermont et al. 2015
Citrobacter portucalensis Ribeiro et al. 2017
Citrobacter rodentium Schauer et al. 1996
Citrobacter sedlakii Brenner et al. 1993
Citrobacter telavivensis Ribeiro et al. 2021
Citrobacter tructae Jung et al. 2021
Citrobacter werkmanii Brenner et al. 1993
Citrobacter youngae Brenner et al. 1993
CP011132_s
CP037864_s
CP046115_s
NRDO_s
PQLZ_s
CP002295_g
CP002295_s
CP003547_g
CP003547_s
CP010048_g
CP010048_s
CP010049_g
CP010049_s
CP021659_g
CP021659_s
Cronobacter Iversen et al. 2008
Cronobacter condimenti Joseph et al. 2012
Cronobacter dublinensis Iversen et al. 2008
Cronobacter malonaticus Iversen et al. 2008
Cronobacter muytjensii Iversen et al. 2008
Cronobacter sakazakii (Farmer et al. 1980) Iversen et al. 2008
Cronobacter turicensis Iversen et al. 2008
Cronobacter universalis Joseph et al. 2012
Curculioniphilus Toju et al. 2010
Curculioniphilus buchneri Toju et al. 2010
JN100062_s
DQ314769_g
DQ314769_s
DQ314774_s
Dryocola Maddock et al. 2023
Dryocola boscaweniae Maddock et al. 2023
Dryocola clanedunensis Maddock et al. 2023
Ecksteinia Toenshoff et al. 2012
Ecksteinia adelgidicola Toenshoff et al. 2012
Edaphovirga Xue et al. 2019
Edaphovirga cremea Xue et al. 2019
EF434872_g
AB506808_s
EF434872_s
EF633999_g
EF633999_s
Enterobacter Hormaeche and Edwards 1960
AP022133_s
CP019113_s
CP026167_s
CP046445_s
CP049786_s
CP056117_s
Enterobacter asburiae Brenner et al. 1988
Enterobacter bugandensis Doijad et al. 2016
Enterobacter cancerogenus (Urosevic 1966) Dickey and Zumoff 1988
Enterobacter chengduensis Wu et al. 2019
Enterobacter chuandaensis Wu et al. 2019
Enterobacter cloacae (Jordan 1890) Hormaeche and Edwards 1960
Enterobacter hormaechei O'Hara et al. 1990
Enterobacter huaxiensis Wu et al. 2019
Enterobacter kobei Kosako et al. 1997
Enterobacter ludwigii Hoffmann et al. 2005
Enterobacter mori Zhu et al. 2011
Enterobacter oligotrophicus Akita et al. 2020
Enterobacter pseudoroggenkampii Wu et al. 2023
Enterobacter quasihormaechei Wang et al. 2020
Enterobacter quasimori Wu et al. 2020
Enterobacter quasiroggenkampii Wu et al. 2020
Enterobacter roggenkampii Sutton et al. 2018
Enterobacter siamensis Khunthongpan et al. 2014
Enterobacter sichuanensis Wu et al. 2018
Enterobacter soli Manter et al. 2011
Enterobacter timonensis Tidjani Alou et al. 2017
Enterobacter vonholyi Cho et al. 2021
Enterobacter wuhouensis Wang et al. 2020
EU078564_s
JUZJ_s
JWJV_s
JXAG_s
LECZ_s
LGIT_s
QBJD_s
RCAA_s
Silvania confinis Maddock et al. 2023
WJYB_s
Entomohabitans Lee et al. 2022
Entomohabitans teleogrylli (Liu et al. 2016) Lee et al. 2022
Escherichia Castellani and Chalmers 1919
CP040443_s
Escherichia albertii Huys et al. 2003
Escherichia coli (Migula 1895) Castellani and Chalmers 1919
Escherichia fergusonii Farmer et al. 1985
Escherichia hermannii Brenner et al. 1983
Escherichia hominis Liu et al. 2021
Escherichia marmotae Liu et al. 2015
Escherichia ruysiae Putten et al. 2021
Escherichia whittamii Gilroy et al. 2021
JAATUR_s
Shigella boydii Ewing 1949
Shigella dysenteriae (Shiga 1898) Castellani and Chalmers 1919
Shigella flexneri Castellani and Chalmers 1919
Shigella sonnei (Levine 1920) Weldin 1927
EU430753_g
EU430753_s
Franconibacter Stephan et al. 2014
Franconibacter daqui Gao et al. 2017
Franconibacter helveticus (Stephan et al. 2007) Stephan et al. 2014
Franconibacter pulveris (Stephan et al. 2008) Stephan et al. 2014
GQ275143_g
GQ275143_s
Hamiltonella Moran et al. 2005
CAADHM_s
Hamiltonella defensa Moran et al. 2005
HM640295_g
HM461136_s
HM640295_s
Huaxiibacter He et al. 2022
Huaxiibacter chinensis He et al. 2022
Intestinirhabdus Xu et al. 2020
Intestinirhabdus alba Xu et al. 2020
JN975122_g
JN975122_s
JX853051_g
JX853051_s
Klebsiella Trevisan 1885
Klebsiella aerogenes (Hormaeche and Edwards 1960) Tindall et al. 2017
Klebsiella africana Rodrigues et al. 2019
Klebsiella granulomatis (Aragao and Vianna 1913) Carter et al. 1999
Klebsiella grimontii Passet and Brisse 2018
Klebsiella huaxiensis Hu et al. 2019
Klebsiella indica Gujarati et al. 2020
Klebsiella michiganensis Saha et al. 2013
Klebsiella oxytoca (Flügge 1886) Lautrop 1956
Klebsiella pasteurii Merla et al. 2020
Klebsiella pneumoniae (Schroeter 1886) Trevisan 1887
Klebsiella quasipneumoniae Brisse et al. 2014
Klebsiella quasivariicola Long et al. 2017
Klebsiella spallanzanii Merla et al. 2020
Klebsiella variicola Rosenblueth et al. 2004
Kleidoceria Küchler et al. 2010
Kleidoceria schneideri Küchler et al. 2010
Kluyvera Farmer et al. 1981
CABIZV_s
CP022114_s
Kluyvera ascorbata Farmer et al. 1981
Kluyvera cryocrescens Farmer et al. 1981
Kluyvera georgiana Müller et al. 1996
Kluyvera intermedia (Izard et al. 1980) Pavan et al. 2005
Kluyvera sichuanensis Liu et al. 2021
LGHZ_s
PYHO_s
Kosakonia Brady et al. 2013
CP005991_s
CP051488_s
Enterobacter lignolyticus Deangelis et al. 2011
Kosakonia arachidis (Madhaiyan et al. 2010) Brady et al. 2013
Kosakonia cowanii (Inoue et al. 2001) Brady et al. 2013
Kosakonia oryzae (Peng et al. 2009) Brady et al. 2013
Kosakonia oryzendophytica (Hardoim et al. 2015) Li et al. 2016
Kosakonia oryziphila (Hardoim et al. 2015) Li et al. 2016
Kosakonia pseudosacchari Kämpfer et al. 2018
Kosakonia quasisacchari Wang et al. 2019
Kosakonia radicincitans (Kämpfer et al. 2005) Brady et al. 2013
Kosakonia sacchari (Zhu et al. 2013) Gu et al. 2014
Leclercia Tamura et al. 1987
Leclercia adecarboxylata (Leclerc 1962) Tamura et al. 1987
Leclercia pneumoniae Hönemann et al. 2022
Leclercia tamurae Maddock et al. 2023
Lelliottia Brady et al. 2013
CP000653_s
CP056199_s
Lelliottia amnigena (Izard et al. 1981) Brady et al. 2013
Lelliottia jeotgali Yuk et al. 2018
Lelliottia nimipressuralis (Carter 1945) Brady et al. 2013
Lelliottia steviae Lin et al. 2022
RKHS_s
Mangrovibacter Rameshkumar et al. 2010
Mangrovibacter phragmitis Behera et al. 2017
Mangrovibacter plantisponsor Rameshkumar et al. 2010
Mangrovibacter yixingensis Zhang et al. 2015
Moranella McCutcheon and von Dohlen 2011
AB374417_s
Moranella endobia McCutcheon and von Dohlen 2011
PDKS_g
PDKR_s
PDKS_s
PDKT_s
PDKU_s
SZZT_s
Phytobacter Zhang et al. 2017
Phytobacter diazotrophicus Zhang et al. 2017
Phytobacter massiliensis (Lagier et al. 2014) Alnajar and Gupta 2017
Phytobacter palmae Madhaiyan et al. 2020
Phytobacter ursingii Pillonetto et al. 2018
Plesiomonas Habs and Schubert 1962
DQ815216_s
HM778492_s
HM778551_s
Plesiomonas shigelloides (Bader 1954) Habs and Schubert 1962
Pluralibacter Brady et al. 2013
Pluralibacter gergoviae (Brenner et al. 1980) Brady et al. 2013
Pluralibacter pyrinus (Chung et al. 1993) Brady et al. 2013
Pseudescherichia Alnajar and Gupta 2017
Pseudescherichia vulneris (Brenner et al. 1983) Alnajar and Gupta 2017
Pseudocitrobacter Kämpfer et al. 2014
Pseudocitrobacter corydidari Guzman et al. 2022
Pseudocitrobacter faecalis Kämpfer et al. 2014
Pseudocitrobacter vendiensis Kämpfer et al. 2020
Puchtella Fukatsu et al. 2009
LKAS_s
Puchtella pedicinophila Fukatsu et al. 2009
Raoultella Drancourt et al. 2001
Raoultella electrica Kimura et al. 2014
Raoultella ornithinolytica (Sakazaki et al. 1989) Drancourt et al. 2001
Raoultella planticola (Bagley et al. 1982) Drancourt et al. 2001
Raoultella terrigena (Izard et al. 1981) Drancourt et al. 2001
WJYD_s
Regiella Moran et al. 2005
Adiaceo aphidicola Darby et al. 2005
Regiella insecticola Moran et al. 2005
Riesia Allen et al. 2007
Riesia pediculicola Allen et al. 2007
Riesia pthiripubis Allen et al. 2007
Salmonella Lignieres 1900
CP057483_s
Salmonella bongori (Le Minor et al. 1985) Reeves et al. 1989
Salmonella enterica (ex Kauffmann and Edwards 1952) Le Minor and Popoff 1987
Salmonella subterranea Shelobolina et al. 2005
Scandinavium Marathe et al. 2020
Scandinavium goeteborgense Marathe et al. 2020
Scandinavium hiltneri Maddock et al. 2023
Scandinavium manionii Maddock et al. 2023
Scandinavium tedordense Maddock et al. 2023
WJYM_s
Schneideria Matsuura et al. 2012
HE586112_s
HE586114_s
Schneideria nysicola Matsuura et al. 2012
Shimwellia Priest and Barker 2010
Shimwellia blattae (Burgess et al. 1973) Priest and Barker 2010
Shimwellia pseudoproteus Priest and Barker 2010
Silvania Maddock et al. 2023
Silvania hatchlandensis Maddock et al. 2023
Superficieibacter Potter et al. 2018
Superficieibacter electus Potter et al. 2018
Tenebrionibacter Hu and Yang 2022
Tenebrionibacter intestinalis Hu and Yang 2022
Tenebrionicola Lee et al. 2022
JAADJJ_s
Tenebrionicola larvae Lee et al. 2022
Trabulsiella McWhorter et al. 1992
Trabulsiella guamensis McWhorter et al. 1992
Trabulsiella odontotermitis Chou et al. 2007
Typhincola Kuechler et al. 2011
FR729478_s
Typhincola belonochilicola Kuechler et al. 2012
Typhincola cinguli Kuechler et al. 2011
Yokenella Kosako et al. 1985
Yokenella regensburgei Kosako et al. 1985
Data type count
  • 0
    Genome
  • 0
    16S rRNA