Taxonomy

This complete taxonomic hierarchy of Bacteria and Archaea was manually constructed by the EzBioCloud team using numerous maximum likelihood phylogenetic trees based on 16S sequences.
Lachnospiraceae Rainey 2010
Acetatifactor Pfeiffer et al. 2013
Acetatifactor muris Pfeiffer et al. 2013
Acetitomaculum Greening and Leedle 1995
Acetitomaculum ruminis Greening and Leedle 1995
Agathobacter Rosero et al. 2016
Agathobacter rectalis (Hauduroy et al. 1937) Rosero et al. 2016
Agathobacter ruminis Rosero et al. 2016
Anaerobium Patil et al. 2015
Anaerobium acetethylicum Patil et al. 2015
Anaerobutyricum Shetty et al. 2018
Anaerobutyricum hallii (Holdeman and Moore 1974) Shetty et al. 2018
Anaerobutyricum soehngenii Shetty et al. 2018
Anaerocolumna Ueki et al. 2016
Anaerocolumna aminovalerica (Hardman and Stadtman 1960) Ueki et al. 2016
Anaerocolumna chitinilytica Ueki et al. 2021
Anaerocolumna jejuensis (Jeong et al. 2004) Ueki et al. 2016
Anaerocolumna sedimenticola Kim et al. 2022
Anaerocolumna xylanovorans (Mechichi et al. 2000) Ueki et al. 2016
Anaeromicropila Ueki et al. 2023
Anaeromicropila herbilytica Ueki et al. 2023
Anaeropeptidivorans Köller et al. 2022
Anaerosacchariphilus Kim et al. 2019
Anaerosporobacter Jeong et al. 2007
Anaerosporobacter faecicola Choi et al. 2021
Anaerosporobacter mobilis Jeong et al. 2007
Anaerostipes Schwiertz et al. 2002
Anaerostipes butyraticus Eeckhaut et al. 2010
Anaerostipes caccae Schwiertz et al. 2002
Anaerostipes faecalis Choi et al. 2022
Anaerostipes hadrus (Moore et al. 1976) Allen-Vercoe et al. 2013
Anaerostipes hominis Lee et al. 2021
Anaerostipes rhamnosivorans Bui et al. 2014
Anaerotaenia Ueki et al. 2016
Anaerotaenia torta Ueki et al. 2016
Anaerotignum Ueki et al. 2017
Anaerotignum aminivorans Ueki et al. 2017
Anaerotignum faecicola Choi et al. 2020
Anaerotignum lactatifermentans (van der Wielen et al. 2002) Ueki et al. 2017
Anaerotignum neopropionicum (Tholozan et al. 1995) Ueki et al. 2017
Anaerotignum propionicum (Cardon and Barker 1946) Ueki et al. 2017
Bacteroides pectinophilus Jensen and Canale-Parola 1987
Bilifractor Wylensek et al. 2021
Bilifractor porci Wylensek et al. 2021
Blautia Liu et al. 2008
Blautia argi Paek et al. 2019
Blautia caecimuris Lagkouvardos et al. 2016
Blautia celeris Liu et al. 2022
Blautia coccoides (Kaneuchi et al. 1976) Liu et al. 2008
Blautia difficilis Liu et al. 2021
Blautia faecis Park et al. 2013
Blautia glucerasea Furuya et al. 2010
Blautia hansenii (Holdeman and Moore 1974) Liu et al. 2008
Blautia hominis Shin et al. 2018
Blautia hydrogenotrophica (Bernalier et al. 1997) Liu et al. 2008
Blautia intestinalis Wang et al. 2021
Blautia luti (Simmering et al. 2002) Liu et al. 2008
Blautia massiliensis Durand et al. 2017
Blautia obeum (Moore et al. 1976) Lawson and Finegold 2015
Blautia phocaeensis Traore et al. 2017
Blautia producta (Prévot 1941) Liu et al. 2008
Blautia provencensis Pham et al. 2017
Blautia pseudococcoides Maturana and Cárdenas 2022
Blautia schinkii (Rieu-Lesme et al. 1997) Liu et al. 2008
Blautia stercoris Park et al. 2012
Blautia wexlerae Liu et al. 2008
Butyribacter Zou et al. 2021
Butyribacter intestini Zou et al. 2021
Jutongia hominis Liu et al. 2021
Butyrivibrio Bryant and Small 1956
Butyrivibrio fibrisolvens Bryant and Small 1956
Butyrivibrio hungatei Kopecny et al. 2003
Butyrivibrio proteoclasticus (Attwood et al. 1996) Moon et al. 2008
Butyrivibrio crossotus Moore et al. 1976
Caecibacterium Oren et al. 2019
Caecibacterium sporoformans Oren et al. 2019
Catenibacillus Braune and Blaut 2018
Catenibacillus scindens Braune and Blaut 2018
Catonella Moore and Moore 1994
Catonella massiliensis Antezack et al. 2021
Catonella morbi Moore and Moore 1994
Cellulosilyticum Cai and Dong 2010
Cellulosilyticum lentocellum (Murray et al. 1987) Cai and Dong 2010
Cellulosilyticum ruminicola Cai and Dong 2010
Chordicoccus Gaffney et al. 2023
Chordicoccus furentiruminis Gaffney et al. 2023
Clostridium aminophilum Paster et al. 1993
Clostridium vitabionis Shin et al. 2021
Clostridium herbivorans Varel et al. 1995
Clostridium polysaccharolyticum (van Gylswyk 1981) van Gylswyk et al. 1983
Clostridium populeti Sleat and Mah 1985
Clostridium phytofermentans Warnick et al. 2002
Clostridium fimetarium Kotsyurbenko et al. 1997
Clostridium fessum Seo et al. 2021
Clostridium symbiosum (Stevens 1956) Kaneuchi et al. 1976
Clostridium transplantifaecale Yimagou et al. 2019
Clostridium colinum (ex Berkhoff et al. 1974) Berkhoff 1985
Clostridium piliforme (ex Tyzzer 1917) Duncan et al. 1993
Coprococcus Holdeman and Moore 1974
Coprococcus eutactus Holdeman and Moore 1974
Coprococcus hominis Liu et al. 2022
Bariatricus massiliensis Bessis et al. 2016
Clostridium nexile Holdeman and Moore 1974
Coprococcus comes Holdeman and Moore 1974
Cuneatibacter Lagkouvardos et al. 2016
Cuneatibacter caecimuris Lagkouvardos et al. 2016
Diplocloster Chaplin et al. 2022
Diplocloster agilis Chaplin et al. 2022
Diplocloster modestus Chaplin et al. 2022
Dorea Taras et al. 2002
Dorea formicigenerans (Holdeman and Moore 1974) Taras et al. 2002
Dorea hominis Liu et al. 2022
Dorea longicatena Taras et al. 2002
Dorea massiliensis Pfleiderer et al. 2013
Dorea phocaeensis Takakura et al. 2019
Eisenbergiella Amir et al. 2014
Eisenbergiella porci Wylensek et al. 2021
Eisenbergiella tayi Amir et al. 2014
Enterocloster Haas and Blanchard 2020
Enterocloster aldensis (Warren et al. 2007) Haas and Blanchard 2020
Enterocloster asparagiformis (Mohan et al. 2007) Haas and Blanchard 2020
Enterocloster bolteae (Song et al. 2003) Haas and Blanchard 2020
Enterocloster citroniae (Warren et al. 2007) Haas and Blanchard 2020
Enterocloster clostridioformis (Burri and Ankersmit 1906) Haas and Blanchard 2020
Enterocloster lavalensis (Domingo et al. 2009) Haas and Blanchard 2020
Lachnoclostridium edouardi Traore et al. 2017
Lachnoclostridium pacaense Pham et al. 2017
Epulopiscium Montgomery and Poliak 1988
Epulopiscium fishelsoni Montgomery and Poliak 1988
Eubacterium difficile Liu et al. 2021
Eubacterium xylanophilum van Gylswyk and van der Toorn 1985
Eubacterium oxidoreducens Krumholz and Bryant 1986
Eubacterium rangiferina Sundset et al. 2008
Eubacterium ramulus Moore et al. 1976
Eubacterium segne Liu et al. 2021
Eubacterium uniforme van Gylswyk and van der Toorn 1985
Eubacterium ventriosum (Tissier 1908) Prévot 1938
Eubacterium plexicaudatum Wilkins et al. 1974
Extibacter Lagkouvardos et al. 2017
Clostridium hylemonae Kitahara et al. 2000
Extibacter muris Lagkouvardos et al. 2017
Faecalicatena Sakamoto et al. 2017
Faecalicatena absiana Shin et al. 2022
Faecalicatena contorta (Prévot 1947) Sakamoto et al. 2017
Faecalicatena faecalis Oh et al. 2023
Faecalicatena fissicatena (Taylor 1972) Sakamoto et al. 2017
Faecalicatena orotica (Wachsman and Barker 1954) Sakamoto et al. 2017
Faecalimonas Sakamoto et al. 2017
Faecalimonas umbilicata Sakamoto et al. 2017
Falcatimonas Watanabe et al. 2016
Falcatimonas natans Watanabe et al. 2016
Jingyaoa shaoxingensis Liu et al. 2021
Frisingicoccus Lagkouvardos et al. 2016
Coprococcus catus Holdeman and Moore 1974
Frisingicoccus caecimuris Lagkouvardos et al. 2016
Fusicatenibacter Takada et al. 2013
Fusicatenibacter saccharivorans Takada et al. 2013
Fusimonas Kusada et al. 2017
Fusimonas intestini Kusada et al. 2017
Glucerabacter Kawata et al. 2018
Glucerabacter canisensis Kawata et al. 2018
Herbinix Koeck et al. 2015
Herbinix hemicellulosilytica Koeck et al. 2015
Herbinix luporum Koeck et al. 2016
Hespellia Whitehead et al. 2004
Hespellia porcina Whitehead et al. 2004
Hespellia stercorisuis Whitehead et al. 2004
Hominifimenecus Afrizal et al. 2022
Hominifimenecus microfluidus Afrizal et al. 2022
Hominisplanchenecus Afrizal et al. 2022
Hominiventricola Afrizal et al. 2022
Howardella Cook et al. 2007
Howardella ureilytica Cook et al. 2007
Hungatella Kaur et al. 2014
Hungatella effluvii Kaur et al. 2014
Hungatella hathewayi (Steer et al. 2002) Kaur et al. 2014
Hungatella hominis Liu et al. 2022
Johnsonella Moore and Moore 1994
Johnsonella ignava Moore and Moore 1994
Jutongia Liu et al. 2022
Jutongia huaianensis Liu et al. 2022
Kineothrix Haas and Blanchard 2017
Kineothrix alysoides Haas and Blanchard 2017
Konateibacter Sarr et al. 2022
Konateibacter massiliensis Sarr et al. 2022
Lachnoanaerobaculum Hedberg et al. 2012
Lachnoanaerobaculum orale Hedberg et al. 2012
Lachnoanaerobaculum saburreum (Prévot 1966) Hedberg et al. 2012
Lachnoanaerobaculum umeaense Hedberg et al. 2012
Lachnobacterium Whitford et al. 2001
Lachnobacterium bovis Whitford et al. 2001
Lachnoclostridium Brahimi et al. 2017
Lachnocurva Holm et al. 2020
Lachnocurva vaginae Holm et al. 2020
Lachnospira Bryant and Small 1956
Bacteroides galacturonicus Jensen and Canale-Parola 1987
Lachnospira eligens (Holdeman and Moore 1974) García-López et al. 2020
Lachnospira hominis Liu et al. 2021
Lachnospira multipara Bryant and Small 1956
Lachnospira pectinoschiza Cornick et al. 1994
Lachnotalea Jarzembowska et al. 2016
Lachnotalea glycerini Jarzembowska et al. 2016
Lacrimispora Haas and Blanchard 2020
Clostridium geopurificans Kwon et al. 2014
Clostridium indicum Gundawar et al. 2019
Hungatella xylanolytica (Scholten-Koerselman et al. 1988) García-López et al. 2020
Lacrimispora aerotolerans (van Gylswyk and van der Toorn 1987) Haas and Blanchard 2020
Lacrimispora algidixylanolytica (Broda et al. 2000) Haas and Blanchard 2020
Lacrimispora amygdalina (Parshina et al. 2003) Haas and Blanchard 2020
Lacrimispora celerecrescens (Palop et al. 1989) Haas and Blanchard 2020
Lacrimispora defluvii Urvashi et al. 2022
Lacrimispora indolis (McClung and McCoy 1957) Haas and Blanchard 2020
Lacrimispora saccharolytica (Murray et al. 1982) Haas and Blanchard 2020
Lacrimispora sphenoides (Douglas et al. 1919) Haas and Blanchard 2020
Lacrimispora xylanolytica (Rogers and Baecker 1991) Haas and Blanchard 2020
Lactonifactor Clavel et al. 2007
Lactonifactor longoviformis Clavel et al. 2007
Ruminococcus gauvreauii Domingo et al. 2008
Lientehia Abdugheni et al. 2023
Lientehia hominis Abdugheni et al. 2023
Qiania dongpingensis Liu et al. 2021
Luxibacter Naud et al. 2021
Luxibacter massiliensis Naud et al. 2021
Marvinbryantia Wolin et al. 2008
Marvinbryantia formatexigens (Wolin et al. 2004) Wolin et al. 2008
Massilistercora Tall et al. 2020
Massilistercora timonensis Tall et al. 2020
Mediterraneibacter Togo et al. 2019
Mediterraneibacter faecis (Kim et al. 2011) Togo et al. 2019
Mediterraneibacter glycyrrhizinilyticus (Sakuma et al. 2006) Togo et al. 2019
Mediterraneibacter hominis Liu et al. 2022
Ruminococcus gnavus Moore et al. 1976
Ruminococcus hominis Liu et al. 2021
Ruminococcus lactaris Moore et al. 1976
Ruminococcus torques Holdeman and Moore 1974
Merdimonas Seo et al. 2017
Merdimonas faecis Seo et al. 2017
Mobilisporobacter Mbengue et al. 2016
Mobilisporobacter senegalensis Mbengue et al. 2016
Mobilitalea Podosokorskaya et al. 2014
Mobilitalea sibirica Podosokorskaya et al. 2014
Mordavella Ndongo et al. 2017
Mordavella massiliensis Ndongo et al. 2017
Moryella Carlier et al. 2007
Fusobacterium naviforme (Jungano 1909) Moore and Holdeman 1970
Moryella indoligenes Carlier et al. 2007
Stomatobaculum longum Sizova et al. 2013
Muricomes Lagkouvardos et al. 2016
Muricomes intestini Lagkouvardos et al. 2016
Murimonas Kläring et al. 2015
Murimonas intestini Kläring et al. 2015
Novisyntrophococcus Chai et al. 2021
Blautia liquoris Lu et al. 2021
Ohessyouella Vera-Ponce de Leon et al. 2022
Ohessyouella blattaphilus Vera-Ponce de Leon et al. 2022
Oliverpabstia Wylensek et al. 2021
Blautia faecicola Kim et al. 2020
Oliverpabstia intestinalis Wylensek et al. 2021
Oribacterium Carlier et al. 2004
Oribacterium asaccharolyticum Sizova et al. 2014
Oribacterium parvum Sizova et al. 2014
Oribacterium sinus Carlier et al. 2004
Fusicatenibacter faecihominis Afrizal et al. 2022
Pararoseburia Abdugheni et al. 2022
Roseburia lenta Liu et al. 2022
Parasporobacterium Lomans et al. 2004
Parasporobacterium paucivorans Lomans et al. 2004
Porcincola Wylensek et al. 2021
Porcincola intestinalis Wylensek et al. 2021
Pseudobutyrivibrio van Gylswyk et al. 1996
Pseudobutyrivibrio ruminis van Gylswyk et al. 1996
Pseudobutyrivibrio xylanivorans Kopecny et al. 2003
Robinsoniella Cotta et al. 2009
Robinsoniella peoriensis Cotta et al. 2009
Roseburia Stanton and Savage 1983
Roseburia cecicola Stanton and Savage 1983
Roseburia difficilis Liu et al. 2022
Roseburia faecis Duncan et al. 2006
Roseburia hominis Duncan et al. 2006
Roseburia intestinalis Duncan et al. 2002
Roseburia inulinivorans Duncan et al. 2006
Roseburia porci Wylensek et al. 2021
Roseburia rectibacter Liu et al. 2021
Roseburia zhanii Liu et al. 2022
Schaedlerella Soh et al. 2019
Sellimonas Seo et al. 2016
Lachnoclostridium phocaeense Brahimi et al. 2017
Sellimonas caecigallum Wongkuna et al. 2020
Sellimonas intestinalis Seo et al. 2016
Sellimonas monacensis Zenner et al. 2021
Shuttleworthia Downes et al. 2002
Shuttleworthia satelles Downes et al. 2002
Sporobacterium Mechichi et al. 1999
Sporobacterium olearium Mechichi et al. 1999
Sporofaciens Rasmussen et al. 2021
Clostridium scindens Morris et al. 1985
Sporofaciens musculi Rasmussen et al. 2021
Suipraeoptans Wylensek et al. 2021
Suipraeoptans intestinalis Wylensek et al. 2021
Syntrophococcus Krumholz and Bryant 1986
Eubacterium cellulosolvens (Bryant et al. 1958) Holdeman and Moore 1972
Syntrophococcus sucromutans Krumholz and Bryant 1986
Variimorphobacter Rettenmaier et al. 2021
Variimorphobacter saccharofermentans Rettenmaier et al. 2021
Velocimicrobium Wylensek et al. 2021
Acetivibrio ethanolgignens Robinson and Ritchie 1981
Velocimicrobium porci Wylensek et al. 2021
Waltera Wylensek et al. 2021
Waltera intestinalis Wylensek et al. 2021
Wansuia Liu et al. 2021
Wansuia hejianensis Liu et al. 2021
Weimeria Scarborough et al. 2020
Weimeria bifida Scarborough et al. 2020
Wujia Liu et al. 2021
Wujia chipingensis Liu et al. 2021
Zhenhengia Liu et al. 2022
Niameybacter massiliensis Tidjani Alou et al. 2017
Zhenhengia yiwuensis Liu et al. 2022
Data type count
  • 0
    Genome
  • 0
    16S rRNA