Taxonomy

This complete taxonomic hierarchy of Bacteria and Archaea was manually constructed by the EzBioCloud team using numerous maximum likelihood phylogenetic trees based on 16S sequences.
Root;Bacteria
Proteobacteria Garrity et al. 2005
Acidithiobacillia Williams and Kelly 2013
Acidithiobacillales Garrity et al. 2005
Acidithiobacillaceae Garrity et al. 2005
Thermithiobacillaceae Garrity et al. 2005
Alphaproteobacteria Garrity et al. 2006
Caulobacterales Henrici and Johnson 1935
Caulobacteraceae Henrici and Johnson 1935
DQ860037_o
DQ860037_f
DQ917864_o
DQ917864_f
Emcibacterales Iino et al. 2016
Emcibacteraceae Iino et al. 2016
Govaniaceae Vandamme et al. 2023
Holosporales Szokoli et al. 2020
AY328755_f
Caedimonadaceae Schrallhammer et al. 2018
Hepatincolaceae Szokoli et al. 2016
Holosporaceae Görtz and Schmidt 2006
Paracaedibacteraceae Horn et al. 1999
Hyphomonadales Kevbrin et al. 2021
Hyphomonadaceae Lee et al. 2005
Iodidimonadales Iino et al. 2016
Iodidimonadaceae Iino et al. 2016
Kiloniellales Wiese et al. 2009
Kiloniellaceae Wiese et al. 2009
Kordiimonadales Kwon et al. 2005
Kordiimonadaceae Xu et al. 2020
Rhodothalassium_f
Magnetococcales Bazylinski et al. 2013
EF371495_f
Magnetaquicoccaceae Koziaeva et al. 2019
Magnetococcaceae Bazylinski et al. 2013
Y13209_f
Maricaulales Kevbrin et al. 2021
Euryhalocaulis_f
Maricaulaceae Kevbrin et al. 2021
Robiginitomaculaceae Kevbrin et al. 2021
Micropepsales Harbison et al. 2017
Micropepsaceae Harbison et al. 2017
Minwuiales Sun et al. 2018
Minwuiaceae Sun et al. 2018
Parvularculales
Parvularculaceae
Pelagibacterales Grote et al. 2012
HQ671838_f
Pelagibacteraceae Thrash et al. 2011
Rhizobiales Kuykendall 2006
AB599867_f
Acuticoccaceae Lai et al. 2019
Aestuariivirgaceae Li et al. 2019
Afifellaceae Hördt et al. 2020
Ahrensiaceae Hördt et al. 2020
Alsobacteraceae Sun et al. 2018
Amorphaceae Hördt et al. 2020
Ancalomicrobiaceae Dahal et al. 2018
Aurantimonadaceae Hördt et al. 2020
AY921699_f
AY945869_f
Bartonellaceae Gieszczykiewicz 1939
Bauldia_f
Beijerinckiaceae Garrity et al. 2006
Blastochloridaceae Hördt et al. 2020
Boseaceae Hördt et al. 2020
Breoghaniaceae Hördt et al. 2020
Brucellaceae Breed et al. 1957
Chelatococcaceae Dedysh et al. 2016
Cohaesibacteraceae Hwang and Cho 2008
Devosiaceae Hördt et al. 2020
EU803296_f
Hartmannibacter_f
Hyphomicrobiaceae Babudieri 1950
JX833616_f
Kaistiaceae Hördt et al. 2020
Labrys_f
Liberibacter_f
Lichenibacteriaceae Pankratov et al. 2020
Lichenihabitantaceae Noh et al. 2019
Methylobacteriaceae Garrity et al. 2006
Methylocystaceae Bowman 2006
Methylopila_f
Neomegalonemataceae Hördt et al. 2020
Nitrobacteraceae Buchanan 1917
Notoacmeibacteraceae Huang et al. 2017
PAC002126_f
Parvibaculaceae Hördt et al. 2020
Phreatobacteraceae Hördt et al. 2020
Phyllobacteriaceae Mergaert and Swings 2006
Pleomorphomonadaceae Hördt et al. 2020
Propylenellaceae Liu et al. 2021
Prosthecomicrobium_f
Pseudoxanthobacteraceae Hördt et al. 2020
Rhabdaerophilaceae Ming et al. 2020
Rhizobiaceae Conn 1938
Rhodobiaceae Garrity et al. 2006
Rhodomicrobium_f
Salinarimonadaceae Cole et al. 2018
Segnochrobactraceae Akter et al. 2020
Stappiaceae Hördt et al. 2020
Tepidamorphaceae Hördt et al. 2020
Thalassocola_f
Xanthobacteraceae Lee et al. 2005
Rhodobacterales Garrity et al. 2006
EU652599_f
Rhodobacteraceae Garrity et al. 2006
Roseobacteraceae Liang et al. 2021
Rhodospirillales Pfennig and Trüper 1971
Acetobacteraceae (ex Henrici 1939) Gillis and De Ley 1980
AY957891_f
Azospirillaceae Hördt et al. 2020
DQ984585_f
Elioraeaceae Habib et al. 2020
EU131034_f
EU131043_f
EU133528_f
Geminicoccaceae Proença et al. 2018
GU118391_f
Micavibrio_f
PAC000146_f
PAC000428_f
PAC002219_f
Reyranellaceae Hördt et al. 2020
Rhodospirillaceae Pfennig and Trüper 1971
Rhodovibrionaceae Hördt et al. 2020
Stellaceae Hördt et al. 2020
Terasakiellaceae Hördt et al. 2020
Thalassobaculaceae Hördt et al. 2020
Thalassospiraceae Hördt et al. 2020
Zavarziniaceae Hördt et al. 2020
Rickettsiales Gieszczykiewicz 1939
AB193901_f
AB491830_f
AF445655_f
Anaplasmataceae Philip 1957
AY328720_f
AY344373_f
AY345543_f
AY571491_f
AY845234_f
CP003801_f
Deianiraeaceae Castelli et al. 2019
EF076081_f
EF520427_f
EF572745_f
EU800706_f
FJ478621_f
FJ602408_f
FJ628217_f
HQ403220_f
JN868828_f
JN983664_f
JQ941856_f
JX570600_f
Midichloriaceae Montagna et al. 2013
PAC000648_f
PAC001951_f
PAC002342_f
Rickettsiaceae Pinkerton 1936
SAR116
OM38_f
Puniceispirillum_f
Sneathiellales Kurahashi et al. 2008
EF173360_f
EF520407_f
Ferrovibrio_f
FJ889304_f
HQ910277_f
Sneathiellaceae Kurahashi et al. 2008
Sphingomonadales Yabuuchi and Kosako 2006
AB294315_f
Erythrobacteraceae Lee et al. 2005
Sphingomonadaceae Kosako et al. 2000
Sphingosinicellaceae Hördt et al. 2020
Zymomonadaceae Hördt et al. 2020
Betaproteobacteria Garrity et al. 2006
AB252926_o
AB252926_f
AM259833_o
AM259833_f
JQ062689_f
AY948046_o
AY948046_f
Burkholderiales Garrity et al. 2006
Alcaligenaceae De Ley et al. 1986
Branchiomonas_f
Burkholderiaceae Garrity et al. 2006
Comamonadaceae Willems et al. 1991
Derxia_f
HQ166641_f
Lautropia_f
Limnobacter_f
OM156_f
Oxalobacteraceae Garrity et al. 2006
Piscinibacterium_f
Quisquiliibacterium_f
Ralstonia_f
Sphaerotilaceae Liu et al. 2023
Sutterellaceae Morotomi et al. 2011
Thiomonas_f
Casimicrobium_o
Casimicrobiaceae Song et al. 2020
EU800906_o
EU800906_f
FJ800542_f
Ferritrophicales Weiss et al. 2007
Ferritrophicaceae Weiss et al. 2007
Ferrovales Johnson et al. 2014
EF682975_f
Ferrovaceae Johnson et al. 2014
Gallionellales Weiss et al. 2007
Gallionellaceae Henrici and Johnson 1935
GQ396817_o
GQ396817_f
JF703372_o
JF703372_f
Methylophilales Garrity et al. 2006
Methylophilaceae Garrity et al. 2006
Nasuia_o
Nasuia_f
Neisseriales Tønjum 2006
Aquella_f
AY328630_f
Chitinibacteraceae Chen et al. 2022
Chromobacteriaceae Adeolu and Gupta 2013
HQ674328_f
Neisseriaceae Prévot 1933
Nitrosomonadales Garrity et al. 2006
AB294329_f
Nitrosomonadaceae Garrity et al. 2006
PAC001907_o
PAC001907_f
PAC001921_o
PAC001921_f
PAC002541_o
EF157089_f
EF157188_f
EU281329_f
PAC002248_f
PAC002541_f
Rhodocyclales Garrity et al. 2006
Azonexaceae Boden et al. 2017
Azovibrio_f
Fluviibacteraceae Watanabe et al. 2020
Rhodocyclaceae Garrity et al. 2006
Zoogloeaceae Boden et al. 2017
Spirillum_o
Spirillaceae Migula 1894
Sterolibacterium_o
Sterolibacteriaceae Boden et al. 2017
Sulfuricellales Watanabe et al. 2015
Sulfuricellaceae Watanabe et al. 2015
Thiobacillus_o
Thiobacillaceae Boden et al. 2017
Usitatibacter_o
EF019596_f
EU244049_f
FR749809_f
Usitatibacteraceae Vieira et al. 2021
Vidania_o
Vidania_f
Zinderia_o
Zinderia_f
Deltaproteobacteria Kuever et al. 2006
AB300073_o
AB300073_f
AB491846_o
AB491846_f
EU544861_f
JN433249_f
AB530223_o
AB530223_f
AB694448_o
AB694448_f
Acidulidesulfobacterales Tan et al. 2019
Acidulidesulfobacteraceae Tan et al. 2019
AJ306774_f
EU385688_f
HM243867_f
AF269002_o
AF269002_f
AJ567548_o
AJ567548_f
AY214193_o
AY214193_f
FJ205263_f
HM243955_f
JQ580446_f
Bradymonadales Wang et al. 2015
Bradymonadaceae Wang et al. 2015
GQ354986_f
Lujinxingiaceae Wang et al. 2022
Microvenatoraceae Wang et al. 2022
DQ394946_o
DQ394946_f
JN488656_f
DQ394969_o
DQ394969_f
DQ811796_o
DQ811796_f
DQ811809_f
EF574244_o
EF574244_f
EU245359_o
EU245359_f
EU246214_o
AB013266_f
EU246214_f
EU287146_o
EF999343_f
EU287146_f
EU335163_o
EU335163_f
EU734937_f
FJ517139_f
HM187154_f
EU491312_o
EU491312_f
EU491876_o
EU491876_f
EU617831_o
EU617831_f
FJ444731_f
JF344535_f
JX193378_f
EU734972_o
EU734972_f
HQ916581_f
EU799406_o
EU799406_f
EU937845_o
EF515953_f
EU937845_f
FM242399_o
FM242399_f
GQ246331_o
GQ246331_f
GQ356959_o
DQ787719_f
EU652624_f
GQ356959_f
GQ433929_o
AY491566_f
GQ433929_f
JF272053_f
JN874129_f
GU112205_o
GU112205_f
HQ114032_o
AF351213_f
AM997629_f
DQ676342_f
EF126241_f
EU861868_f
HQ114032_f
JN452622_f
JN469214_f
JN503735_f
JN503914_f
JN537279_f
JN977373_f
JF272080_o
JF272080_f
JN233606_o
JN233606_f
JN450332_f
JN450561_o
JN450561_f
JN507156_o
JN507156_f
JN510169_o
EU385962_f
JN510169_f
JN538884_f
JN512415_o
AB185724_f
JN512415_f
JN609354_o
JN609354_f
OM27
GU061934_f
GU230400_f
U70713_f
PAC001922_o
EU491430_f
FM253606_f
GU208445_f
JF202649_f
PAC001922_f
PAC002546_f
PAC002249_o
FM253643_f
PAC002249_f
SAR324
EU491252_f
EU491889_f
SAR324_f
Desulfurellia Waite et al. 2020
Desulfurellales Kuever et al. 2006
AB252434_f
AM712346_f
Desulfurellaceae Kuever et al. 2006
Hippeaceae Waite et al. 2020
Epsilonproteobacteria Garrity et al. 2006
Campylobacterales Garrity et al. 2006
AF458287_f
AJ576349_f
AKKQ_f
Arcobacteraceae Waite et al. 2020
AY280383_f
AY531573_f
AY531598_f
AY571498_f
AY672534_f
Campylobacteraceae Vandamme and De Ley 1991
DQ228643_f
EF462604_f
FM994668_f
Helicobacteraceae Garrity et al. 2006
Hydrogenimonaceae
JF747790_f
L35521_f
Nitratiruptoraceae Waite et al. 2020
PAC001537_f
Sulfurimonadaceae Waite et al. 2020
Sulfurospirillaceae Waite et al. 2020
Sulfurovaceae Waite et al. 2020
Nautiliales Miroshnichenko et al. 2004
Nautiliaceae Miroshnichenko et al. 2004
Thioreductoraceae Waite et al. 2020
EU101270_c
EU101270_o
EU101270_f
FJ202111_f
Gammaproteobacteria Garrity et al. 2005
AB054183_o
AB054183_f
Acidiferrobacterales Kojima et al. 2015
Acidiferrobacteraceae Kojima et al. 2015
Aeromonadales Martin-Carnahan and Joseph 2005
Aeromonadaceae Colwell et al. 1986
Succinivibrionaceae Hippe et al. 1999
Alteromonadales Bowman and McMeekin 2005
Agarivorans_f
Alishewanella_f
Alkalimonas_f
Alteromonadaceae Ivanova and Mikhailov 2001
Celerinatantimonadaceae Cramer et al. 2011
Colwelliaceae Ivanova et al. 2004
Corallincola_f
Echinimonadaceae Sun et al. 2023
Ferrimonadaceae Ivanova et al. 2004
FJ202530_f
Gallaecimonas_f
Idiomarinaceae Ivanova et al. 2004
Moritellaceae Ivanova et al. 2004
Pseudoalteromonadaceae Ivanova et al. 2004
Psychrobium_f
Psychromonadaceae Ivanova et al. 2004
Shewanellaceae Ivanova et al. 2004
AM259780_o
AM259780_f
Arenicellales Teramoto et al. 2015
Arenicellaceae Teramoto et al. 2015
Cardiobacteriales Garrity et al. 2005
Cardiobacteriaceae Dewhirst et al. 1990
GU202005_f
Ostreibacteriaceae Wang et al. 2021
Carsonella_o
Carsonella_f
Cellvibrionales Spring et al. 2015
AXVV_f
AY212617_f
Cellvibrionaceae Spring et al. 2015
DQ351786_f
DQ395870_f
EF468718_f
EU287122_f
FM242298_f
GQ246344_f
GQ274159_f
Halieaceae Spring et al. 2015
HQ190428_f
Microbulbiferaceae Spring et al. 2015
OM182_f
Porticoccaceae Spring et al. 2015
Pseudohongiella_f
Spongiibacteraceae Spring et al. 2015
Chromatiales Imhoff 2005
AB189339_f
Achromatium_f
AF165908_f
AF170421_f
AJ581350_f
AM882571_f
Aquichromatiaceae Yang et al. 2017
AY212648_f
Chromatiaceae Bavendamm 1924
DQ394980_f
Ectothiorhodospiraceae Imhoff 1984
EF076097_f
EF157132_f
EF572656_f
EU589310_f
EU700150_f
EU735630_f
EU804331_f
FJ712445_f
FJ712598_f
FM242209_f
FM242252_f
FM242303_f
FM242409_f
FR670385_f
GQ246312_f
Granulosicoccaceae Lee et al. 2008
GU583986_f
Halofilum_f
Halorhodospiraceae Imhoff et al. 2023
Halothiobacillaceae Kelly and Wood 2005
Methylohalomonas_f
MPQE_f
Nitrosococcus_f
Sedimenticola_f
Sulfuriflexus_f
Tenderia_f
Thioalkalibacteraceae Boden 2017
Thioalkalispiraceae Mori et al. 2011
Thiobios_f
Thiogranum_f
Thiohalobacter_f
Thiohalomonas_f
Thiolapillus_f
Thioprofundaceae Kojima et al. 2017
Wenzhouxiangellaceae Wang et al. 2015
Woeseiaceae Du et al. 2016
DQ407746_o
DQ407746_f
EF573277_o
EF573277_f
Endonucleariibacter_o
Endonucleariibacter_f
Enterobacterales Adeolu et al. 2016
AJ290038_f
Bruguierivoracaceae Li et al. 2021
Budviciaceae Adeolu et al. 2016
Enterobacteriaceae Rahn 1937
Erwiniaceae Adeolu et al. 2016
Hafniaceae Adeolu et al. 2016
Morganellaceae Adeolu et al. 2016
Pectobacteriaceae Adeolu et al. 2016
Thorselliaceae Kämpfer et al. 2015
Yersiniaceae Adeolu et al. 2016
FN820314_o
DQ833471_f
FN820314_f
FP929140_o
FP929140_f
GQ351018_o
GQ351018_f
HQ191059_o
HQ191059_f
HQ671930_o
HQ671930_f
Ignatzschineria_o
Ignatzschineriaceae Montecillo 2023
Immundisolibacterales Corteselli et al. 2017
Immundisolibacteraceae Corteselli et al. 2017
Kangiellales Liao et al. 2021
Kangiellaceae Wang et al. 2015
Legionellales Garrity et al. 2005
AM997495_f
Coxiellaceae Garrity et al. 2005
EU925872_f
GU444107_f
HQ697737_f
Legionellaceae Brenner et al. 1979
PAC000044_f
Yamatotia_f
Lysobacterales Christensen and Cook 1978
Lysobacteraceae Christensen and Cook 1978
Rhodanobacteraceae Naushad et al. 2015
Marinicella_o
AB015514_f
Marinicella_f
Methylococcales Bowman 2005
Cycloclasticus_f
Methylococcaceae Whittenbury and Krieg 1984
Methylomonas_f
Methylophaga_f
Methylothermaceae (Hirayama et al. 2014) Tindall 2019
Moraxellales Liao et al. 2021
Moraxellaceae Rossau et al. 1991
Nevskiales Naushad et al. 2015
Algiphilaceae Gutierrez et al. 2012
Nevskiaceae Henrici and Johnson 1935
Oceanospirillales Garrity et al. 2005
Alcanivoracaceae Golyshin et al. 2005
AM745135_f
Balneatrichaceae Krishnan et al. 2019
EU735638_f
FM242290_f
FM242465_f
FM242473_f
FN435243_f
GU070690_f
GU118475_f
Gynuellaceae Kevbrin et al. 2020
Halomarinus_f
Halomonadaceae Franzmann et al. 1989
HQ191045_f
HQ673497_f
JF824773_f
Litorivicinaceae Deshmukh and Oren 2023
Natronospirillaceae Kevbrin et al. 2020
Oceanospirillaceae Garrity et al. 2005
Pleioneaceae Wang et al. 2020
Pseudospirillum_f
Saccharospirillaceae Kevbrin et al. 2020
VNHQ_f
Orbales Kwong and Moran 2013
Orbaceae Kwong and Moran 2013
PAC001146_o
PAC001146_f
Pasteurellales Garrity et al. 2005
Pasteurellaceae Pohl 1981
Psittacicellaceae Xin et al. 2019
Plasticicumulans_o
Competibacteraceae Mcllroy et al. 2014
Plasticicumulans_f
Pseudomonadales Orla-Jensen 1921
AB096215_f
Aestuariirhabdaceae Khan et al. 2020
DQ337067_f
Endozoicomonadaceae Bartz et al. 2018
Hahellaceae Garrity et al. 2005
Marinobacteraceae Liao et al. 2021
Oleiphilaceae Golyshin et al. 2002
Perlucidibacaceae Liao et al. 2021
Pseudomonadaceae Winslow et al. 1917
Ventosimonadaceae Lin et al. 2016
Zooshikellaceae Huang et al. 2021
Ruthia_o
EU236384_f
PAC001538_f
Ruthia_f
Salinisphaerales
Salinisphaeraceae Naushad et al. 2015
SAR86_o
AHBI_f
AY744396_f
DQ396070_f
PAC001342_f
Steroidobacterales Montecillo 2023
DQ984612_f
FJ152613_f
FJ152692_f
PAC002617_f
Steroidobacteraceae Liu et al. 2019
Thiohalorhabdus_o
Thiohalorhabdus_f
Thiomicrospira_o
FR715579_f
Thiomicrospira_f
Thiotrichales Garrity et al. 2005
AY426613_f
Beggiatoaceae Migula 1894
Endecteinascidia_f
EU400612_f
Fastidiosibacteraceae Xiao et al. 2018
FJ717235_f
Francisellaceae Sjöstedt 2005
GU941086_f
JN233060_f
JQ062683_f
JQ716320_f
Leucothrix_f
Piscirickettsiaceae Fryer and Lannan 2005
Thiofilaceae Boden and Scott 2018
Thiolineaceae Boden and Scott 2018
Thiotrichaceae Garrity et al. 2005
Vibrionales Garrity and Holt 2001
Vibrionaceae Véron 1965
GQ354939_c
GQ354939_o
GQ354939_f
HM187006_c
HM187006_o
HM187006_f
Hydrogenophilia Boden et al. 2022
Hydrogenophilales Garrity et al. 2006
FJ715977_f
Hydrogenophilaceae Garrity et al. 2006
Thiobacter_f
JQ287144_c
JQ287144_o
JQ287144_f
Zetaproteobacteria Emerson et al. 2007
Mariprofundales Hördt et al. 2020
Mariprofundaceae Hördt et al. 2020
Data type count
  • 0
    Genome
  • 0
    16S rRNA