Taxonomy

This complete taxonomic hierarchy of Bacteria and Archaea was manually constructed by the EzBioCloud team using numerous maximum likelihood phylogenetic trees based on 16S sequences.
Root;Bacteria;Proteobacteria;Alphaproteobacteria;Rhizobiales
Rhizobiaceae Conn 1938
Agrobacterium Conn 1942
Agrobacterium arsenijevicii Kuzmanović et al. 2019
Agrobacterium bohemicum Zahradnik et al. 2018
Agrobacterium burrii Mafakheri et al. 2022
Agrobacterium cavarae Flores-Félix et al. 2020
Agrobacterium cucumeris Warabieda et al. 2023
Agrobacterium deltaense Yan et al. 2017
Agrobacterium divergens Naranjo et al. 2023
Agrobacterium fabrum Lassalle et al. 2011
Agrobacterium larrymoorei Bouzar and Jones 2001
Agrobacterium leguminum Castellano-Hinojosa et al. 2021
Agrobacterium nepotum (Pulawska et al. 2012) Mousavi et al. 2016
Agrobacterium pusense (Panday et al. 2011) Mousavi et al. 2016
Agrobacterium radiobacter (Beijerinck and van Delden 1902) Young et al. 2001
Agrobacterium rosae Kuzmanović et al. 2019
Agrobacterium rubi (Hildebrand 1940) Young et al. 2001
Agrobacterium salinitolerans Yan et al. 2017
Agrobacterium shirazense Mafakheri et al. 2022
Agrobacterium skierniewicense Pulawska et al. 2012
Agrobacterium tomkonis Singh et al. 2022
Agrobacterium tumefaciens (Smith and Townsend 1907) Conn 1942
Agrobacterium vaccinii Puławska et al. 2022
CP019702_s
JXQV_s
LMMM_s
LT009740_s
LT009757_s
LXPS_s
QRFF_s
Rhizobium oryzihabitans Zhao et al. 2020
Rhizobium pongamiae Kesari et al. 2013
UBZF_s
UCGK_s
UCJU_s
Allorhizobium de Lajudie et al. 1998
AB362777_s
Allorhizobium ampelinum Kuzmanović et al. 2022
Allorhizobium borbori (Zhang et al. 2011) Mousavi et al. 2016
Allorhizobium oryziradicis (Zhao et al. 2017) Lin et al. 2020
Allorhizobium paknamense (Kittiwongwattana and Thawai 2013) Mousavi et al. 2016
Allorhizobium pseudoryzae (Zhang et al. 2011) Mousavi et al. 2016
Allorhizobium sonneratiae Li et al. 2023
Allorhizobium taibaishanense (Yao et al. 2012) Hördt et al. 2020
Allorhizobium terrae Lin et al. 2020
Allorhizobium undicola de Lajudie et al. 1998
Allorhizobium vitis (Ophel and Kerr 1990) Mousavi et al. 2016
FTMR_s
Rhizobium qilianshanense Xu et al. 2012
Rhizobium straminoryzae Lin et al. 2014
WPHK_s
WPHV_s
Ciceribacter Kathiravan et al. 2013
Ciceribacter azotifigens Siddiqi et al. 2018
Ciceribacter ferrooxidans Deng et al. 2020
Ciceribacter lividus Kathiravan et al. 2013
Ciceribacter naphthalenivorans (Kaiya et al. 2018) Rahi et al. 2021
Ciceribacter selenitireducens (Hunter et al. 2008) Rahi et al. 2021
Ciceribacter thiooxidans Deng et al. 2017
CP021372_s
FTMB_s
UBPL_s
Endobacterium Menéndez et al. 2021
CP030828_s
Endobacterium cereale Menéndez et al. 2021
Endobacterium yantingense (Chen et al. 2015) Kuzmanović et al. 2022
FJ560597_s
Rhizobium cellulosilyticum García-Fraile et al. 2007
Rhizobium panacihumi Kang et al. 2021
Rhizobium smilacinae Zhang et al. 2015
Rhizobium wenxiniae Gao et al. 2017
SLYW_s
Ensifer Casida 1982
Ensifer adhaerens Casida 1982
Ensifer morelensis (Wang et al. 2002) Wang et al. 2015
Ensifer sesbaniae Wang et al. 2015
JTLA_s
LAZS_s
Ferranicluibacter Roca-Couso et al. 2023
Ferranicluibacter rubi Roca-Couso et al. 2023
FJUR_s
FOGR_s
LMQB_s
LMQD_s
QJSR_s
UBPA_s
FJ793198_g
FJ793198_s
Gellertiella Tóth et al. 2017
AF235998_s
Ensifer collicola Jang et al. 2017
Gellertiella hungarica Tóth et al. 2017
UBJZ_s
Georhizobium Cao et al. 2020
Georhizobium profundi Cao et al. 2020
LR701459_s
Martelella Rivas et al. 2005
CP014275_s
CP054861_s
Martelella alba Li et al. 2021
Martelella caricis Lee 2019
Martelella endophytica Bibi et al. 2013
Martelella limonii Chung et al. 2016
Martelella lutilitoris Kim and Lee 2020
Martelella mangrovi Zhang and Margesin 2014
Martelella mediterranea Rivas et al. 2005
Martelella radicis Zhang and Margesin 2014
Martelella suaedae Chung et al. 2016
SMAR_s
Neorhizobium Mousavi et al. 2015
AKKC_s
CCRI_s
CCRN_s
FXAF_s
Neorhizobium alkalisoli (Lu et al. 2009) Mousavi et al. 2015
Neorhizobium galegae (Lindström 1989) Mousavi et al. 2015
Neorhizobium huautlense (Wang et al. 1998) Mousavi et al. 2015
Neorhizobium lilium Liu et al. 2019
Neorhizobium petrolearium (Zhang et al. 2012) Kuzmanović et al. 2022
Neorhizobium tomejilense Soenens et al. 2020
Neorhizobium vignae (Ren et al. 2011) Hördt et al. 2020
Neorhizobium xiangyangii Pan et al. 2022
QOVX_s
Rhizobium deserti Liu et al. 2019
Rhizobium puerariae Boonsnongcheep et al. 2016
SLUQ_s
STFZ_s
UBWZ_s
UCEY_s
UCJA_s
Onobrychidicola Ashrafi et al. 2023
Onobrychidicola muellerharveyae Ashrafi et al. 2023
Rhizobium alvei Sheu et al. 2015
STFX_s
Pararhizobium Mousavi et al. 2016
CP016450_s
JQJO_s
LMDA_s
LMEY_s
LMFA_s
LMFB_s
Pararhizobium antarcticum Naqvi et al. 2017
Pararhizobium arenae (Zhang et al. 2017) Kuzmanović et al. 2022
Pararhizobium capsulatum (Hirsch and Müller 1986) Mousavi et al. 2016
Pararhizobium giardinii (Amarger et al. 1997) Mousavi et al. 2016
Pararhizobium haloflavum Shen et al. 2018
Pararhizobium herbae (Ren et al. 2011) Mousavi et al. 2016
Pararhizobium mangrovi Li et al. 2021
Pararhizobium polonicum Pulawska et al. 2017
Rhizobium gei Shi et al. 2016
Rhizobium sphaerophysae Xu et al. 2012
UBTA_s
UCHD_s
UCKS_s
UIBY_s
Peteryoungia Rahi et al. 2021
ALJF_s
CACSJP_s
CP016499_s
FTMQ_s
FWXU_s
LJHS_s
LMJE_s
Peteryoungia aggregata (Hirsch and Müller 1986) Kuzmanović et al. 2022
Peteryoungia desertarenae Rahi et al. 2021
Peteryoungia ipomoeae (Sheu et al. 2016) Rahi et al. 2021
PKRP_s
Rhizobium glycinendophyticum Wang et al. 2019
Rhizobium rhizophilum Gao et al. 2020
Rhizobium rosettiformans Kaur et al. 2011
Rhizobium wuzhouense Yuan et al. 2018
UBNV_s
UBZT_s
UCMW_s
VFPK_s
Rhizobium Frank 1889
AEYF_s
AKKA_s
AQUD_s
CP022998_s
CP025513_s
CP034998_s
CP043499_s
CP050097_s
CP050308_s
DQ401094_s
FJ193930_s
JF176813_s
JH719395_s
JQJS_s
JQLD_s
KB898392_s
LBHV_s
LMDG_s
LMHV_s
LOKY_s
NWSQ_s
PAC001905_s
Pseudorhizobium banfieldiae Lassalle et al. 2021
Pseudorhizobium halotolerans Lassalle et al. 2021
PYJQ_s
QLMF_s
QMKK_s
RAIN_s
Rhizobium acaciae Hsouna et al. 2023
Rhizobium acidisoli Román-Ponce et al. 2016
Rhizobium aegyptiacum Shamseldin et al. 2017
Rhizobium aethiopicum Aserse et al. 2017
Rhizobium alamii Berge et al. 2009
Rhizobium alarense Shen et al. 2022
Rhizobium album Hang et al. 2019
Rhizobium altiplani Baraúna et al. 2016
Rhizobium anhuiense Zhang et al. 2015
Rhizobium aquaticum Máthé et al. 2019
Rhizobium arsenicireducens Mohapatra et al. 2020
Rhizobium azibense Mnasri et al. 2014
Rhizobium azooxidifex Behrendt et al. 2016
Rhizobium bangladeshense Rashid et al. 2015
Rhizobium binae Rashid et al. 2015
Rhizobium calliandrae Rincón-Rosales et al. 2013
Rhizobium capsici Lin et al. 2015
Rhizobium cauense Liu et al. 2015
Rhizobium changzhiense Zhang et al. 2021
Rhizobium chutanense Huo et al. 2019
Rhizobium cremeum Yang et al. 2022
Rhizobium croatiense Rajnovic et al. 2023
Rhizobium daejeonense Quan et al. 2005
Rhizobium dioscoreae Ouyabe et al. 2020
Rhizobium ecuadorense Ribeiro et al. 2015
Rhizobium endolithicum Parag et al. 2014
Rhizobium endophyticum López-López et al. 2011
Rhizobium esperanzae Cordeiro et al. 2017
Rhizobium etli Segovia et al. 1993
Rhizobium fabae Tian et al. 2008
Rhizobium favelukesii Torres Tejerizo et al. 2016
Rhizobium flavescens Su et al. 2021
Rhizobium flavum Gu et al. 2014
Rhizobium freirei Dall'Agnol et al. 2013
Rhizobium gallicum Amarger et al. 1997
Rhizobium grahamii López-López et al. 2012
Rhizobium hainanense Chen et al. 1997
Rhizobium halophilum Shen et al. 2022
Rhizobium halophytocola Bibi et al. 2012
Rhizobium helanshanense Qin et al. 2011
Rhizobium helianthi Wei et al. 2015
Rhizobium hidalgonense Yan et al. 2020
Rhizobium indicum Rahi et al. 2020
Rhizobium indigoferae Wei et al. 2002
Rhizobium jaguaris Rincón-Rosales et al. 2013
Rhizobium laguerreae Saïdi et al. 2014
Rhizobium leguminosarum (Frank 1879) Frank 1889
Rhizobium lemnae Kittiwongwattana and Thawai 2014
Rhizobium lentis Rashid et al. 2015
Rhizobium leucaenae Ribeiro et al. 2012
Rhizobium lusitanum Valverde et al. 2006
Rhizobium marinum Liu et al. 2015
Rhizobium mayense Rincón-Rosales et al. 2013
Rhizobium mesoamericanum López-López et al. 2012
Rhizobium mesosinicum Lin et al. 2009
Rhizobium metallidurans Grison et al. 2015
Rhizobium miluonense Gu et al. 2008
Rhizobium mongolense Van Berkum et al. 1998
Rhizobium multihospitium Han et al. 2008
Rhizobium oryzicola Zhang et al. 2015
Rhizobium pakistanense Khalid et al. 2015
Rhizobium paranaense Dall'Agnol et al. 2014
Rhizobium phaseoli Dangeard 1926
Rhizobium pisi Ramírez-Bahena et al. 2008
Rhizobium populi Rozahon et al. 2014
Rhizobium populisoli Shen et al. 2021
Rhizobium quercicola Wang et al. 2022
Rhizobium rhizogenes (Riker et al. 1930) Young et al. 2001
Rhizobium rhizolycopersici Thin et al. 2021
Rhizobium rhizoryzae Zhang et al. 2014
Rhizobium rhododendri Kuzmanović et al. 2023
Rhizobium ruizarguesonis Jorrin et al. 2020
Rhizobium setariae Kang and Seo 2022
Rhizobium soli Yoon et al. 2010
Rhizobium sophorae Jiao et al. 2015
Rhizobium sophoriradicis Jiao et al. 2015
Rhizobium subbaraonis Ramana et al. 2013
Rhizobium sullae Squartini et al. 2002
Rhizobium tarimense Turdahon et al. 2013
Rhizobium terrae Ruan et al. 2021
Rhizobium terricola Dahal et al. 2023
Rhizobium tibeticum Hou et al. 2009
Rhizobium tropici Martínez-Romero et al. 1991
Rhizobium tubonense Zhang et al. 2011
Rhizobium tumorigenes Kuzmanović et al. 2019
Rhizobium vallis Wang et al. 2011
Rhizobium viscosum (Gasdorf et al. 1965) Flores-Félix et al. 2017
Rhizobium yanglingense Tan et al. 2001
Rhizobium zeae Celador-Lera et al. 2017
SGXP_s
SJMC_s
SLYM_s
SLZK_s
STGA_s
UBJO_s
UBMU_s
UBNY_s
UBQL_s
UBTY_s
UBUL_s
UBVU_s
UCCA_s
UCHK_s
UCII_s
UCIT_s
UEHQ_s
UICJ_s
VNIP_s
Shinella An et al. 2006
QNUJ_s
Shinella curvata Subhash and Lee 2016
Shinella daejeonensis Lee et al. 2011
Shinella fusca Vaz-Moreira et al. 2010
Shinella granuli An et al. 2006
Shinella kummerowiae Lin et al. 2008
Shinella lacus Gong et al. 2022
Shinella oryzae Gao et al. 2022
Shinella pollutisoli Mu et al. 2018
Shinella yambaruensis Matsui et al. 2009
Shinella zoogloeoides An et al. 2006
Sinorhizobium Chen et al. 1988
Ensifer aridi Le Quere et al. 2017
Sinorhizobium alkalisoli (Li et al. 2016) Kuzmanović et al. 2022
Sinorhizobium americanum Toledo et al. 2004
Sinorhizobium arboris Nick et al. 1999
Sinorhizobium chiapanecum Rincón-Rosales 2009
Sinorhizobium fredii (Scholla and Elkan 1984) Chen et al. 1988
Sinorhizobium garamanticum (Merabet et al. 2010) Kuzmanović et al. 2022
Sinorhizobium glycinis (Yan et al. 2016) Kuzmanović et al. 2022
Sinorhizobium kostiense Nick et al. 1999
Sinorhizobium kummerowiae Wei et al. 2002
Sinorhizobium medicae Rome et al. 1996
Sinorhizobium meliloti (Dangeard 1926) De Lajudie et al. 1994
Sinorhizobium mexicanum (Lloret et al. 2011) Kuzmanović et al. 2022
Sinorhizobium numidicum (Merabet et al. 2010) Kuzmanović et al. 2022
Sinorhizobium psoraleae (Wang et al. 2015) Kuzmanović et al. 2022
Sinorhizobium saheli De Lajudie et al. 1994
Sinorhizobium shofinae (Chen et al. 2017) Kuzmanović et al. 2022
Sinorhizobium sojae (Li et al. 2011) Kuzmanović et al. 2022
Sinorhizobium terangae De Lajudie et al. 1994
Xaviernesmea Kuzmanović et al. 2022
Xaviernesmea oryzae (Peng et al. 2008) Kuzmanović et al. 2022
Xaviernesmea rhizosphaerae Kuzmanović et al. 2022
Data type count
  • 0
    Genome
  • 0
    16S rRNA