Taxonomy

This complete taxonomic hierarchy of Bacteria and Archaea was manually constructed by the EzBioCloud team using numerous maximum likelihood phylogenetic trees based on 16S sequences.
Root;
Bacteria Woese et al. 1990
10BAV
10BAV_c
A3DB
A3DB_c
AB177176_p
AB177176_c
AB179666_p
AB179666_c
AB193897_p
AB193897_c
AB354626_p
AB354626_c
AB364881_p
AB364881_c
AB672201_p
AB672201_c
Abditibacteriota Tahon et al. 2018
Abditibacteria Tahon et al. 2018
Acidobacteria Thrash and Coates 2012
Acidobacteriia Cavalier-Smith 2002
Blastocatellia Pascual et al. 2016
CP011806_c
DQ833472_c
EU700145_c
EU881314_c
FJ485394_c
HM185886_c
Holophagae Fukunaga et al. 2008
PAC001813_c
PAC001852_c
PAC002259_c
PAC002261_c
PAC002280_c
Thermoanaerobaculia Dedysh and Yilmaz 2018
Thermotomaculum_c
Vicinamibacteria Dedysh and Yilmaz 2018
Actinobacteria Stackebrandt et al. 1997
Acidimicrobiia Norris 2013
Actinomycetia (Stackebrandt et al. 1997) Salam et al. 2020
Coriobacteriia König 2013
Nitriliruptoria Ludwig et al. 2013
OPB41
Rubrobacteria Suzuki 2013
Thermoleophilia Suzuki and Whitman 2013
AD3
PAC000071_c
Aerophobetes_CD12
ASMM_c
AF068809_p
AF068809_c
AF209779_p
AF209779_c
AF234118_p
AF234118_c
EU132452_c
AF419662_p
AF419662_c
AM229192_p
AM229192_c
AM712347_p
AM712347_c
AM712349_p
AM712349_c
AM991224_p
AM991224_c
Aminicenantes Rinke et al. 2013
Aminicenans_c
Aquificae Reysenbach 2002
Aquificae_c Reysenbach 2002
Armatimonadetes Tamaki et al. 2011
AF027089_c
AJ306784_c
Armatimonadia Tamaki et al. 2011
Chthonomonadetes Lee et al. 2011
DQ645248_c
EU266864_c
Fimbriimonadia Im et al. 2012
PAC000401_c
PAC000533_c
PAC000535_c
Atribacterota Katayama et al. 2021
Atribacteria Katayama et al. 2021
AY013649_p
AY013649_c
AY345499_p
AY345499_c
AY435510_p
AY435510_c
AY491574_p
AY491574_c
AY869688_p
AY869688_c
Bacteroidetes Krieg et al. 2012
Bacteroidia Krieg 2012
Chitinophagia Munoz et al. 2017
Cytophagia Nakagawa 2012
FJ612278_c
FJ820362_c
Flavobacteriia Bernardet 2012
HQ324883_c
JF769590_c
JN801109_c
JQ579880_c
PAC000007_c
Saprospiria Hahnke et al. 2018
SM1A07_c
Sphingobacteriia Kämpfer 2012
Balneolota Hahnke et al. 2016
Balneolia Munoz et al. 2017
Bdellovibrionota Waite et al. 2020
Bacteriovoracia Waite et al. 2020
Bdellovibrionia Waite et al. 2020
Oligoflexia Nakai et al. 2014
Berkelbacteria Wrighton et al. 2014
CP011213_c
DQ404642_c
DQ404828_c
EU385818_c
HM187357_c
JF775635_c
JN860334_c
LBRB_c
LBVO_c
BH1
AF352532_c
Bipolaricaulota Hao et al. 2018
Bipolaricaulis_c
DQ513069_c
Caldiserica Mori et al. 2009
Caldisericia Mori et al. 2009
Calditrichaeota Kublanov et al. 2017
Calditrichia Kublanov et al. 2021
Calescamantes Rinke et al. 2013
Calescibacterium_c
Chlamydiae Garrity and Holt 2012
Chlamydiia (Cavalier-Smith 2002) Horn 2016
Chlorobi Iino et al. 2010
Chlorobiia Garrity and Holt 2001
Chloroflexi Garrity and Holt 2001
AF234124_c
Anaerolineae Yamada et al. 2006
Ardenticatenia Kawaichi et al. 2013
Bathosphaeria Mehrshad et al. 2018
Caldilineae Yamada et al. 2006
Chloroflexia Gupta et al. 2013
Dehalococcoidia Loffler et al. 2013
DQ463736_c
EF018867_c
EF516466_c
EF516615_c
EU133931_c
EU133950_c
EU181507_c
EU245404_c
FJ592912_c
HM748667_c
HQ674362_c
JQ738915_c
Ktedonobacteria Cavaletti et al. 2007
Limnocylindria Mehrshad et al. 2018
PAC000286_c
SAR202_c
Tepidiformia Kochetkova et al. 2020
Thermobaculum_c
Thermoflexia Dodsworth et al. 2014
Thermomicrobia Garrity and Holt 2002
Umbricyclopia Mehrshad et al. 2018
Chrysiogenetes Garrity and Holt 2002
Chrysiogenetes_c Garrity and Holt 2002
Cloacimonetes Rinke et al. 2013
Cloacimonas_c
Coprothermobacterota Pavan et al. 2018
Coprothermobacteria Pavan et al. 2018
CPR2 Brown et al. 2015
LBXK_c
CPR3 Brown et al. 2015
LBQB_c
CU917754_p
CU917754_c
CU922841_p
CU922841_c
Cyanobacteriota Oren et al. 2022
Chroobacteria
DQ520188_c
FJ810552_c
Gloeobacteria
Hormogoneae
PAC000053_c
PAC001562_c
PAC002560_c
Vampirovibrio_c
Deferribacterota Garrity and Holt 2021
Deferribacteres Huber and Stetter 2002
Deinococcus-Thermus Weisburg et al. 1989
Deinococci Garrity and Holt 2002
Desulfobacterota Waite et al. 2020
Deferrisomatia Waite et al. 2020
Desulfarculia Waite et al. 2020
Desulfobaccia Waite et al. 2020
Desulfobacteria Waite et al. 2020
Desulfobulbia Waite et al. 2020
Desulfofervidia Waite et al. 2020
Desulfomonilia Waite et al. 2020
Desulfovibrionia Waite et al. 2020
Desulfuromonadia Waite et al. 2020
Dissulfuribacteria Waite et al. 2020
Syntrophia Waite et al. 2020
Syntrophobacteria Waite et al. 2020
Syntrophorhabdia Waite et al. 2020
Thermodesulfobacteria Hatchikian et al. 2002
Dex80
Dex80_c
Dictyoglomi Patel 2012
Dictyoglomia Patel 2012
DQ270659_p
DQ270659_c
DQ329653_p
DQ329653_c
DQ394940_p
DQ394940_c
DQ404758_p
DQ404758_c
DQ404824_p
DQ404824_c
DQ463697_p
DQ463697_c
DQ490002_p
DQ490002_c
DQ499300_p
DQ499300_c
DQ513075_p
DQ513075_c
EU048691_c
DQ787710_p
DQ787710_c
DQ833500_p
DQ833500_c
EF019318_p
EF019318_c
EF092200_p
EF092200_c
EF208687_p
EF208687_c
EF688356_p
EF688356_c
Elulimicrobiota Rodriguez-R et al. 2020
Elulimicrobia Rodriguez-R et al. 2020
Elusimicrobia Geissinger et al. 2010
AF351216_c
EF520538_c
Elusimicrobia_c Geissinger et al. 2010
Endomicrobia Zheng et al. 2018
EU488113_c
EU048619_p
EU048619_c
EU134922_p
EU134922_c
EU245920_p
EU245920_c
EU246184_p
EU246184_c
EU266861_p
EU266861_c
EU385705_p
EU385705_c
EU385775_p
EU385775_c
EU385794_p
EU385794_c
EU491194_p
EU491194_c
EU491789_p
EU491789_c
JF144851_c
EU542485_p
EU542485_c
EU635945_p
EU635945_c
EU652510_p
EU652510_c
EU700159_p
EU700159_c
EU844128_p
EU844128_c
Fermentibacteria Kirkegaard et al. 2016
Fermentibacteria_c
Fervidibacteria Rinke et a. 2013
Fervidibacter_c
Fibrobacteres Garrity and Holt 2012
Chitinispirillia Sorokin et al. 2016
Chitinivibrionia Sorokin et al. 2014
Fibrobacteria Spain et al. 2012
JN468304_c
JN697815_c
Firmicutes Gibbons and Murray 1978
Bacilli Ludwig et al. 2010
Clostridia Rainey 2010
CU918251_c
Culicoidibacteria Neupane et al. 2020
Desulfuribacillia Sorokin et al. 2021
Erysipelotrichia Ludwig et al. 2010
Limnochordia Watanabe et al. 2015
Negativicutes Marchandin et al. 2010
Thermolithobacteria Sokolova et al. 2007
Tissierellia Alauzet et al. 2014
FJ437850_p
FJ437850_c
FJ516972_p
FJ516972_c
FJ814747_p
FJ814747_c
FJ814748_p
FJ814748_c
FN436175_p
FN436175_c
FN550079_p
FN550079_c
FN553925_p
FN553925_c
FN553940_p
FN553940_c
Fusobacteria Garrity and Holt 2012
Fusobacteriia Staley and Whitman 2012
Gemmatimonadetes Zhang et al. 2003
EU374070_c
Gemmatimonadetes_c Zhang et al. 2003
HQ190281_c
Longimicrobia Pascual et al. 2016
GN04
EU385751_c
GQ246394_p
GQ246394_c
GQ246397_p
EU385748_c
EU385912_c
EU386003_c
GQ246397_c
JQ816557_c
GQ347214_p
GQ347214_c
GQ354974_p
GQ354974_c
GQ479988_p
GQ479988_c
GU117951_p
GU117951_c
GU118339_p
GU118339_c
GU118361_p
GU118361_c
GU196247_p
GU196247_c
GU208502_p
GU208502_c
GU363019_p
FJ716462_c
GU363019_c
GU390861_p
GU390861_c
GU454958_p
GU454958_c
HE604052_p
HE604052_c
HE604774_p
HE604774_c
HM041954_p
HM041954_c
HM066440_p
HM066440_c
HM066578_p
HM066578_c
HM128617_p
HM128617_c
HM186384_p
HM186384_c
HM187141_p
HM187141_c
HM187447_p
HM187447_c
HM243817_p
HM243817_c
HM448388_p
HM448388_c
HQ003654_p
HQ003654_c
HQ120789_p
HQ120789_c
HQ184017_p
HQ184017_c
HQ190512_p
HQ190512_c
HQ912765_p
HQ912765_c
Hydrogenedentes_NKB19
Hydrogenedens_c
Ignavibacteriota Podosokorskaya et al. 2013
DQ088767_c
FJ517031_c
FN870283_c
Ignavibacteria Podosokorskaya et al. 2013
PAC000396_c
PAC002694_c
JF344564_p
JF344564_c
JF935187_p
JF935187_c
JMYB36
JMYB36_c
JN107068_p
JN107068_c
JN427826_p
JN427826_c
JN441182_p
JN441182_c
JN447567_p
JN447567_c
JN453005_p
JN446133_c
JN453005_c
JN453634_p
JN453634_c
JN454959_p
JN454959_c
JN458752_p
JN458752_c
JN468336_p
JN468336_c
JN475265_p
JN475265_c
JN475705_p
JN475705_c
JN483098_p
JN483098_c
JN484792_p
JN484792_c
JN488140_p
JN488140_c
JN495242_p
JN495242_c
JN497613_p
JN497613_c
JN509359_p
JN509359_c
JN537230_p
JN537230_c
JN537925_p
JN537925_c
JN539338_p
JN539338_c
JQ072929_p
JQ072929_c
JQ072981_p
JQ072981_c
JQ086867_p
JQ086867_c
JQ088375_p
JQ088375_c
JQ580043_p
JQ580043_c
JQ612252_p
JQ612252_c
JQ816607_p
JQ816607_c
JQ816888_p
JQ816888_c
JQ817711_p
JQ817711_c
JS1
AQYX_c
JX105615_p
JX105615_c
JX240660_p
JX240660_c
Kapabacteria Kantor et al. 2015
Kapabacteria_c
Kazan
CP011216_c
Kiritimatiellota Spring et al. 2016
Kiritimatiellia Spring et al. 2022
Tichowtungiia Mu et al. 2020
Kryptonia Eloe-Fadrosh et al. 2016
Kryptonia_c
Latescibacteria_WS3
FM165243_c
GQ354951_c
Latescibacter_c
Lentisphaerae Cho et al. 2004
Lentisphaeria Cho et al. 2012
Oligosphaeria Qiu et al. 2013
Microgenomatota Rinke et al. 2013
AQSN_c
Microgenomatus_c
Moduliflexota Sekiguchi et al. 2015
JN449420_c
JQ925058_c
Moduliflexia Sekiguchi et al. 2015
Vecturichia Sekiguchi et al. 2015
Muiribacteriota Barnum et al. 2018
Muiribacterium_c
Myxococcota Waite et al. 2020
Myxococcia Waite et al. 2020
Polyangia Waite et al. 2020
Neomarinimicrobiota Rinke et al. 2013
AYLG_c
Nitrospinota Lücker et al. 2021
Nitrospinia Lücker et al. 2013
Nitrospirae Garrity and Holt 2001
EU386038_c
Nitrospiria Garrity and Holt 2001
Thermodesulfovibrionia Umezawa et al. 2023
OMAN
PAC001892_c
Omnitrophica_OP3
AB015559_c
AF027088_c
AQSZ_c
AY373410_c
DQ513071_c
EU385809_c
EU522667_c
FP245540_c
JN398069_c
JQ086826_c
JQ278884_c
PAC002640_c
OP2
OP2_c
OPS2
OPS2_c
PAC001017_p
PAC001017_c
PAC002216_p
PAC002216_c
PAC002309_p
PAC002309_c
PAC002636_p
PAC002636_c
Parcubacteria_OD1
EU488087_c
LCGL_c
PAC002653_c
Paceibacter_c
Parcunitrobacteria Castelle et al. 2017
Peregrinibacteria Brown et al. 2015
Peribacteria Anantharaman et al. 2016
Planctomycetes Garrity and Holt 2001
AJ224943_c
Brocadiae Jenkins and Staley 2013
EU385896_c
EU589258_c
FJ444691_c
FJ516762_c
GQ348069_c
JN475307_c
JN508204_c
JN508910_c
JN515085_c
JQ278812_c
OM190_c
PAC000043_c
PAC001018_c
PAC002607_c
Phycisphaerae Fukunaga et al. 2010
Planctomycetia Ward 2020
U81766_c
Poribacteria_p
DQ811929_c
HM066562_c
Poribacteria_c
Proteobacteria Garrity et al. 2005
Acidithiobacillia Williams and Kelly 2013
Alphaproteobacteria Garrity et al. 2006
Betaproteobacteria Garrity et al. 2006
Deltaproteobacteria Kuever et al. 2006
Desulfurellia Waite et al. 2020
Epsilonproteobacteria Garrity et al. 2006
EU101270_c
Gammaproteobacteria Garrity et al. 2005
GQ354939_c
HM187006_c
Hydrogenophilia Boden et al. 2022
JQ287144_c
Zetaproteobacteria Emerson et al. 2007
Pyropristinus Colman et al. 2016
Caldipriscus_c
Rhodothermaeota Munoz et al. 2016
Rhodothermia Munoz et al. 2017
Saccharibacteria Albertsen et al. 2013
EU043224_c
PAC002431_c
Saccharimonadia McLean et al. 2020
Spirochaetes Cavalier-Smith 2002
Spirochaetia Paster 2020
SR1
AB476296_c
AF068794_c
CP006913_c
JN223430_c
JX040412_c
Sumerlaeota Kadnikov et al. 2019
EU246057_c
Sumerlaeia Kadnikov et al. 2019
Synergistetes Jumas-Bilak et al. 2009
Synergistia Jumas-Bilak et al. 2009
TDNP
TDNP_c
Tectomicrobia Wilson et al. 2014
Entotheonella_c
Tenericutes Murray 1984
Mollicutes Edward and Freundt 1967
Thermodesulfobiota Frolov et al. 2023
Thermodesulfobiia Frolov et al. 2023
Thermotogae Reysenbach 2002
Thermotogae_c Reysenbach 2002
TM6
TM6_c
UT06
AM712334_c
EU246230_c
UT06_c
Verrucomicrobia Hedlund 2012
Opitutae Choo et al. 2007
PAC002693_c
Terrimicrobia García-López et al. 2020
Verrucomicrobiae Hedlund et al. 1998
WS1
DQ330736_c
WS1_c
WS5
WS5_c
WS6
DQ397493_c
FJ744910_c
LBWK_c
PAC000380_c
WWE3
CP006914_c
LDXK_c
Archaea Woese et al. 1990
AAG_p
MHVG1_c
MHVG2_c
Aenigmarchaeota Rinke et al. 2013
AB600450_c
AB722182_c
AB722186_c
AB722187_c
Altarchaeota Probst et al. 2014
Altarchaeum_c
Bathyarchaeota Meng et al. 2014
LUCB_c
MCG_c
Crenarchaeota Garrity and Holt 2002
AB113629_c
AF325185_c
AF523942_c
DQ924751_c
Thermoprotei Reysenbach 2002
THSCG_c
DQ228516_p
DQ228516_c
DQ228522_p
DQ228522_c
Euryarchaeota Garrity and Holt 2002
AB111479_c
AB213092_c
AB237754_c
AB329763_c
AB364935_c
AJ133624_c
AJ299199_c
Archaeoglobi Garrity and Holt 2002
CP010424_c
DHVE3_c
DHVE4a_c
DHVE4b_c
DHVE5_c
DHVE6a_c
DHVE6b_c
DQ230932_c
DUSEL4_c
EF444638_c
FJ810532_c
FR682481_c
GU190980_c
Halobacteria Grant et al. 2002
JQ989695_c
LBSQ_c
LNJC_c
MBGe_c
Methanobacteria Boone 2002
Methanococci Boone 2002
Methanomicrobia
Methanonatronarchaeia Sorokin et al. 2018
Methanopyri Garrity and Holt 2002
Nanohaloarchaea Narasingarao et al. 2012
SA2_c
SAGMEGMSBL_c
Thermococci Zillig and Reysenbach 2002
Kariarchaeota Liu et al. 2021
Kariarchaeia Liu et al. 2021
Korarchaeota Barns et al. 1996
Korarchaeum_c
Nanoarchaeota Huber et al. 2002
Nanoarchaeum_c
Nanobdellia Kato et al. 2022
Poseidoniota Rinke et al. 2019
Poseidoniia Rinke et al. 2019
Thermoplasmata Reysenbach 2002
Prometheoarchaeum_p
MHVG3_c
Prometheoarchaeum_c
Thaumarchaeota Brochier-Armanet et al. 2008
AF361212_c
Conexivisphaeria Kato et al. 2021
FFSB_c
Group1a_c
Nitrososphaeria Stieglmeier et al. 2014
THSG2_c
Undinarchaeota Dombrowski et al. 2020
DQ522902_c
Undinarchaeia Dombrowski et al. 2020
Wukongarchaeota Liu et al. 2021
Wukongarchaeia Liu et al. 2021
Data type count
  • 0
    Genome
  • 0
    16S rRNA