MTP Taxonomy
This complete taxonomic hierarchy of Bacteria and Archaea was manually constructed by the EzBioCloud team using numerous maximum likelihood phylogenetic trees based on 16S sequences.
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Aeromonas allosaccharophila 
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Aeromonas australiensis
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Aeromonas fluvialis
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Aeromonas eucrenophila
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Aeromonas aquatica
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Aeromonas tecta
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Aeromonas salmonicida subsp. salmonicida
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Aeromonas bestiarum
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Aeromonas piscicola
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Aeromonas salmonicida subsp. achromogenes
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Aeromonas salmonicida subsp. masoucida
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Aeromonas salmonicida subsp. pectinolytica
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Aeromonas salmonicida subsp. smithia
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Haemophilus piscium
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Aeromonas caviae
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Aeromonas enteropelogenes
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Aeromonas sanarellii
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Aeromonas taiwanensis
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Aeromonas dhakensis
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Aeromonas veronii
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Aeromonas ichthiosmia
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Aeromonas lacus
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Aeromonas hydrophila subsp. hydrophila
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Aeromonas hydrophila subsp. ranae
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Aeromonas encheleia
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Aeromonas molluscorum
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Aeromonas finlandensis
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Aeromonas finlandiensis
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Aeromonas sobria
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Aeromonas rivuli
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Alteromonas addita
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Alteromonas stellipolaris
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Alteromonas naphthalenivorans
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Paraglaciecola agarilytica
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Paraglaciecola chathamensis
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Paraglaciecola oceanifecundans
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CP000388_s
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Paraglaciecola mesophila
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Idiomarina maritima
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Idiomarina tainanensis
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Marinobacter sediminum
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Marinobacter similis
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Moritella japonica
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Moritella viscosa
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Alteromonas fuliginea
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Pseudoalteromonas arctica
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Pseudoalteromonas atlantica
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Pseudoalteromonas carrageenovora
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Pseudoalteromonas espejiana
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Pseudoalteromonas hodoensis
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Pseudoalteromonas haloplanktis
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Pseudoalteromonas distincta
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Pseudoalteromonas nigrifaciens
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Pseudoalteromonas paragorgicola
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Pseudoalteromonas agarivorans
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Pseudoalteromonas aliena
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Pseudoalteromonas aurantia
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Pseudoalteromonas citrea
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Pseudoalteromonas piscicida
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Pseudoalteromonas flavipulchra
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Pseudoalteromonas maricaloris
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Pseudoalteromonas issachenkonii
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Pseudoalteromonas tetraodonis
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Psychromonas ingrahamii
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Psychromonas boydii
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Psychromonas kaikoae
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Psychromonas marina
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Shewanella algae
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Shewanella upenei
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Shewanella colwelliana
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Shewanella algidipiscicola
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Shewanella aquimarina
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Shewanella loihica
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Shewanella pealeana
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Shewanella halifaxensis
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Shewanella japonica
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Shewanella pacifica
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Shewanella livingstonensis
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Shewanella vesiculosa
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Shewanella marinintestina
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Shewanella sairae
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Shewanella schlegeliana
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Shewanella putrefaciens
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Shewanella profunda
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Cellvibrio mixtus subsp. mixtus
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Teredinibacter turnerae
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CP001614_s
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Allochromatium minutissimum
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Allochromatium vinosum
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Marichromatium gracile
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Marichromatium purpuratum
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Thioalkalivibrio versutus
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AQPB_s
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AQXQ_s
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KB906511_s
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CP001905_s
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KB906394_s
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KB907320_s
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KB898725_s
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Arhodomonas aquaeolei
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Arhodomonas recens
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Brenneria roseae subsp. roseae
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Brenneria roseae subsp. americana
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Buttiauxella gaviniae
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Buttiauxella noackiae
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Buttiauxella izardii
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Buttiauxella warmboldiae
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Citrobacter amalonaticus
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Citrobacter farmeri
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Citrobacter freundii
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Citrobacter pasteurii
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Citrobacter werkmanii
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Citrobacter murliniae
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Cronobacter dublinensis subsp. dublinensis
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Cronobacter dublinensis subsp. lactaridi
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Cronobacter dublinensis subsp. lausannensis
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Dickeya dadantii subsp. dieffenbachiae
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Dickeya dadantii subsp. dadantii
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Edwardsiella ictaluri
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Edwardsiella anguillarum
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Edwardsiella piscicida
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Edwardsiella tarda
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Edwardsiella hoshinae
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Enterobacter cloacae subsp. cloacae
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Enterobacter cloacae subsp. dissolvens
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Enterobacter ludwigii
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JVQI_s
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CP003737_s
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Pantoea ananatis
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Pantoea vagans
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Pantoea brenneri
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Pantoea conspicua
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Escherichia coli
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Escherichia fergusonii
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Shigella flexneri
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Shigella sonnei
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Shigella boydii
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Klebsiella oxytoca
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Klebsiella michiganensis
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Klebsiella pneumoniae subsp. pneumoniae
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Klebsiella pneumoniae subsp. ozaenae
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Klebsiella pneumoniae subsp. rhinoscleromatis
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Klebsiella quasipneumoniae subsp. quasipneumoniae
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Klebsiella variicola
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Klebsiella quasipneumoniae subsp. similipneumoniae
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Kosakonia sacchari
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CP005991_s
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Lonsdalea quercina subsp. quercina
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Lonsdalea quercina subsp. britannica
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Lonsdalea quercina subsp. iberica
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Lonsdalea quercina subsp. populi
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Morganella morganii subsp. morganii
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Morganella morganii subsp. sibonii
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Pantoea dispersa
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AP012551_s
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Pantoea septica
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CCAQ_s
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Curtobacterium plantarum
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Pantoea agglomerans
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Pantoea stewartii subsp. stewartii
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Pantoea stewartii subsp. indologenes
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Pectobacterium carotovorum subsp. carotovorum
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Pectobacterium carotovorum subsp. odoriferum
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Photorhabdus asymbiotica subsp. asymbiotica
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Photorhabdus asymbiotica subsp. australis
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Photorhabdus luminescens subsp. luminescens
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Photorhabdus luminescens subsp. akhurstii
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Photorhabdus luminescens subsp. caribbeanensis
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Photorhabdus luminescens subsp. hainanensis
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Photorhabdus luminescens subsp. kayaii
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Photorhabdus luminescens subsp. kleinii
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Photorhabdus luminescens subsp. laumondii
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Photorhabdus luminescens subsp. noenieputensis
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Photorhabdus temperata subsp. temperata
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Photorhabdus temperata subsp. cinerea
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Photorhabdus temperata subsp. khanii
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Photorhabdus temperata subsp. stackebrandtii
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Photorhabdus temperata subsp. tasmaniensis
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Photorhabdus temperata subsp. thracensis
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Providencia alcalifaciens
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Providencia rustigianii
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Providencia rettgeri
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Providencia vermicola
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Pseudocitrobacter anthropi
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Pseudocitrobacter faecalis
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Rahnella aquatilis
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CP002505_s
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Rahnella bruchi
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Rahnella variigena
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Rahnella woolbedingensis
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Rahnella victoriana
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Raoultella ornithinolytica
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Raoultella planticola
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Salmonella enterica subsp. enterica
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Salmonella enterica subsp. arizonae
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Salmonella enterica subsp. diarizonae
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Salmonella enterica subsp. houtenae
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Salmonella enterica subsp. indica
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Salmonella enterica subsp. salamae
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Serratia marcescens subsp. marcescens
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KQ089779_s
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Serratia marcescens subsp. sakuensis
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Serratia nematodiphila
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Serratia fonticola
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Serratia glossinae
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Serratia liquefaciens
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Serratia grimesii
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Serratia proteamaculans
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Tatumella ptyseos
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Tatumella terrea
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Yersinia intermedia
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CP009997_s
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Yersinia aldovae
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Yersinia bercovieri
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Yersinia pekkanenii
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Yersinia mollaretii
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Yersinia enterocolitica subsp. enterocolitica
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Yersinia enterocolitica subsp. palearctica
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Yersinia rohdei
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CQAW_s
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Yersinia pseudotuberculosis
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Yersinia similis
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Yersinia wautersii
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Yersinia frederiksenii
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CQBO_s
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Yersinia entomophaga
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Yersinia nurmii
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CQBW_s
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Legionella pneumophila subsp. pneumophila
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Legionella pneumophila subsp. fraseri
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Legionella pneumophila subsp. pascullei
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Methylobacter marinus
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Methylobacter whittenburyi
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Methylomicrobium alcaliphilum
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Methylomicrobium japanense
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Methylomonas denitrificans
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AQOV_s
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Methylomonas aurantiaca
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Methylomonas fodinarum
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Methylophaga thalassica
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Methylophaga aminisulfidivorans
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Nevskia aquatilis
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Nevskia persephonica
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Alcanivorax dieselolei
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Alcanivorax xenomutans
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Zooshikella ganghwensis
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Zooshikella marina
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Chromohalobacter israelensis
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Chromohalobacter salexigens
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Cobetia amphilecti
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Cobetia litoralis
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Cobetia marina
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Cobetia pacifica
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Halomonas boliviensis
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Halomonas alkaliantarctica
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Halomonas neptunia
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Halomonas olivaria
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Halomonas venusta
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Halomonas alkaliphila
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Halomonas meridiana
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Halomonas aquamarina
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Halomonas axialensis
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Halomonas caseinilytica
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Halomonas sinaiensis
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Halomonas flava
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Halomonas qijiaojingensis
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Halomonas halmophila
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Halomonas sabkhae
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Halomonas halophila
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Halomonas salina
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Halomonas smyrnensis
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Halomonas hamiltonii
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Halomonas johnsoniae
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Halomonas stevensii
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Halomonas janggokensis
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Halomonas subterranea
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JQLV_s
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Halomonas titanicae
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Actinobacillus lignieresii
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Actinobacillus pleuropneumoniae
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Actinobacillus suis
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Actinobacillus equuli subsp. equuli
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Haemophilus parahaemolyticus
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Actinobacillus equuli subsp. haemolyticus
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Avibacterium gallinarum
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Avibacterium volantium
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Pasteurella multocida subsp. multocida
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Pasteurella multocida subsp. gallicida
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Pasteurella multocida subsp. septica
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Acinetobacter bohemicus
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Acinetobacter pakistanensis
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Acinetobacter pittii
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Acinetobacter oleivorans
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Acinetobacter refrigeratorensis
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Acinetobacter variabilis
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Enhydrobacter aerosaccus
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Moraxella osloensis
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Psychrobacter aquaticus
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Psychrobacter vallis
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Psychrobacter faecalis
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Psychrobacter pulmonis
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Psychrobacter marincola
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Psychrobacter submarinus
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Psychrobacter proteolyticus
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Psychrobacter nivimaris
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Psychrobacter oceani
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Psychrobacter pacificensis
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Azotobacter nigricans subsp. nigricans
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Pseudomonas entomophila
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AE015451_s
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CP000926_s
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Pseudomonas plecoglossicida
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CP002870_s
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JHEE_s
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Pseudomonas hunanensis
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Pseudomonas monteilii
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Pseudomonas taiwanensis
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Pseudomonas mosselii
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Pseudomonas avellanae
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AVEF_s
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CP007014_s
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Pseudomonas fulva
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BATF_s
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Pseudomonas parafulva
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Pseudomonas asplenii
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Pseudomonas fuscovaginae
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Pseudomonas alcaliphila
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Pseudomonas chengduensis
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Pseudomonas oleovorans subsp. lubricantis
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Pseudomonas toyotomiensis
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Pseudomonas caricapapayae
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Pseudomonas amygdali
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Pseudomonas savastanoi
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Pseudomonas tremae
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Pseudomonas veronii
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Pseudomonas extremaustralis
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Pseudomonas extremorientalis
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Pseudomonas antarctica
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Pseudomonas meridiana
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Pseudomonas poae
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Pseudomonas simiae
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Pseudomonas trivialis
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Pseudomonas arsenicoxydans
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Pseudomonas lini
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Pseudomonas prosekii
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Pseudomonas fragi
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Pseudomonas psychrophila
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Pseudomonas weihenstephanensis
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Pseudomonas deceptionensis
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Pseudomonas lundensis
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Pseudomonas brassicacearum subsp. brassicacearum
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Pseudomonas brassicacearum subsp. neoaurantiaca
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Pseudomonas brenneri
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Pseudomonas proteolytica
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Pseudomonas cedrina subsp. cedrina
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Pseudomonas cedrina subsp. fulgida
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Pseudomonas chlororaphis subsp. chlororaphis
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Pseudomonas chlororaphis subsp. aurantiaca
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Pseudomonas chlororaphis subsp. aureofaciens
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Pseudomonas chlororaphis subsp. piscium
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Pseudomonas syringae
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Pseudomonas congelans
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Pseudomonas ficuserectae
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Pseudomonas corrugata
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Pseudomonas kilonensis
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Pseudomonas costantinii
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Pseudomonas lurida
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Pseudomonas tuomuerensis
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Pseudomonas flexibilis
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Pseudomonas gessardii
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Pseudomonas libanensis
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Pseudomonas marginalis
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Pseudomonas grimontii
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Pseudomonas rhodesiae
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Pseudomonas jessenii
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Pseudomonas reinekei
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Pseudomonas sagittaria
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Pseudomonas linyingensis
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Pseudomonas mohnii
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Pseudomonas moorei
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Pseudomonas vancouverensis
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Pseudomonas nitritireducens
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Pseudomonas nitroreducens
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Pseudomonas oleovorans subsp. oleovorans
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Pseudomonas oryzihabitans
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Pseudomonas psychrotolerans
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Salinisphaera halophila
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Salinisphaera orenii
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Thioalkalimicrobium aerophilum
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Thioalkalimicrobium sibiricum
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Thiomicrospira pelophila
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Thiomicrospira thyasirae
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Francisella asiatica
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Francisella noatunensis subsp. orientalis
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Francisella noatunensis subsp. noatunensis
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Francisella piscicida
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Francisella tularensis subsp. tularensis
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Francisella tularensis subsp. holarctica
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Francisella tularensis subsp. mediasiatica
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Francisella tularensis subsp. novicida
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Photobacterium aquae
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Photobacterium panuliri
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Photobacterium aquimaris
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Photobacterium piscicola
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Photobacterium damselae subsp. damselae
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Photobacterium damselae subsp. piscicida
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Photobacterium phosphoreum
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Photobacterium iliopiscarium
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Photobacterium kishitanii
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Salinivibrio costicola subsp. costicola
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Salinivibrio costicola subsp. alcaliphilus
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Salinivibrio costicola subsp. vallismortis
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Vibrio alginolyticus
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Vibrio azureus
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Vibrio natriegens
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Vibrio atlanticus
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Vibrio tasmaniensis
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Vibrio campbellii
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Vibrio rotiferianus
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Vibrio celticus
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Vibrio crassostreae
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Vibrio gigantis
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Vibrio pomeroyi
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Vibrio cholerae
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Vibrio metecus
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Vibrio mimicus
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Vibrio diazotrophicus
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Vibrio plantisponsor
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Vibrio ezurae
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Vibrio neonatus
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Vibrio hyugaensis
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Vibrio owensii
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Vibrio kanaloae
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Vibrio toranzoniae
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Vibrio maritimus
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Vibrio variabilis
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Vibrio mediterranei
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Vibrio shilonii
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Vibrio tapetis subsp. tapetis
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Vibrio tapetis subsp. britannicus
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LATR_s
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ALYK_s
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Pseudomonas geniculata
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Pseudomonas hibiscicola
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Stenotrophomonas pavanii
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Stenotrophomonas maltophilia
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Xanthomonas campestris
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Pseudomonas cissicola
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Xanthomonas arboricola
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Xanthomonas bromi
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Xanthomonas cassavae
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Xanthomonas citri subsp. citri
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Xanthomonas citri subsp. malvacearum
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Xanthomonas cynarae
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Xanthomonas gardneri
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Xanthomonas hortorum
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Xanthomonas oryzae
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Xanthomonas phaseoli
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Xanthomonas pisi
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Xanthomonas populi
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Xanthomonas theicola
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Xanthomonas vasicola
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Xanthomonas vesicatoria
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Xanthomonas albilineans
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Xanthomonas hyacinthi
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Xanthomonas melonis
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Xanthomonas translucens
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Xanthomonas alfalfae subsp. alfalfae
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Xanthomonas alfalfae subsp. citrumelonis
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Xanthomonas cucurbitae
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Xanthomonas euvesicatoria
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Xanthomonas fragariae
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Xanthomonas fuscans subsp. aurantifolii
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Xanthomonas fuscans subsp. fuscans
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Xanthomonas perforans
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Xylella fastidiosa subsp. fastidiosa
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Xylella fastidiosa subsp. multiplex
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