MTP Taxonomy
This complete taxonomic hierarchy of Bacteria and Archaea was manually constructed by the EzBioCloud team using numerous maximum likelihood phylogenetic trees based on 16S sequences.
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Escherichia coli 
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Serratia marcescens subsp. sakuensis
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Ewingella americana
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Yersinia pestis
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Salmonella enterica subsp. salamae
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Salmonella enterica subsp. indica
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Salmonella enterica subsp. houtenae
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Salmonella enterica subsp. enterica
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Salmonella enterica subsp. diarizonae
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Serratia marcescens subsp. marcescens
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Salmonella enterica subsp. arizonae
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Klebsiella pneumoniae subsp. pneumoniae
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Klebsiella quasipneumoniae subsp. quasipneumoniae
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Enterobacter cloacae subsp. cloacae
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Yersinia enterocolitica subsp. palearctica
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Pantoea stewartii subsp. stewartii
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Cronobacter dublinensis subsp. lactaridi
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Pectobacterium carotovorum subsp. actinidiae
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Klebsiella quasipneumoniae subsp. similipneumoniae
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Enterobacter cloacae subsp. dissolvens
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Klebsiella pneumoniae subsp. rhinoscleromatis
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Pectobacterium carotovorum subsp. odoriferum
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Pectobacterium carotovorum subsp. carotovorum
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Cronobacter dublinensis subsp. lausannensis
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Enterobacter xiangfangensis
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Klebsiella pneumoniae subsp. ozaenae
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Pectobacterium carotovorum subsp. brasiliense
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Yersinia enterocolitica subsp. enterocolitica
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Enterobacter hormaechei subsp. steigerwaltii
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Enterobacter hormaechei subsp. oharae
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Enterobacter hormaechei subsp. hormaechei
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Pantoea stewartii subsp. indologenes
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Cronobacter dublinensis subsp. dublinensis
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Pantoea agglomerans
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Pantoea dispersa
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Pantoea ananatis
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Pantoea anthophila
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Pantoea vagans
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Pantoea deleyi
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Pantoea eucalypti
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Pantoea septica
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Pantoea cypripedii
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Pantoea calida
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Pantoea conspicua
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Pantoea gaviniae
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Pantoea brenneri
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Pantoea allii
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Pantoea wallisii
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Pantoea rwandensis
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Pantoea rodasii
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Pantoea beijingensis
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Pantoea intestinalis
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Pantoea coffeiphila
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Pantoea alhagi
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Pantoea eucrina
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Yersinia pseudotuberculosis
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Yersinia ruckeri
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Yersinia kristensenii
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Yersinia frederiksenii
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Yersinia intermedia
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Yersinia aldovae
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Yersinia rohdei
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Yersinia mollaretii
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Yersinia bercovieri
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Yersinia aleksiciae
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Yersinia similis
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Yersinia massiliensis
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Yersinia pekkanenii
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Yersinia nurmii
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Yersinia entomophaga
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Yersinia wautersii
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Serratia plymuthica
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Serratia liquefaciens
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Serratia proteamaculans
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Serratia odorifera
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Serratia fonticola
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Serratia ficaria
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Serratia grimesii
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Serratia entomophila
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Serratia quinivorans
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Serratia ureilytica
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Serratia nematodiphila
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Serratia glossinae
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Serratia myotis
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Serratia vespertilionis
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Serratia aquatilis
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Serratia oryzae
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Erwinia amylovora
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Erwinia rhapontici
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Erwinia mallotivora
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Erwinia persicina
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Erwinia aphidicola
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Erwinia billingiae
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Erwinia pyrifoliae
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Erwinia toletana
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Erwinia papayae
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Erwinia tasmaniensis
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Erwinia oleae
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Erwinia piriflorinigrans
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Erwinia uzenensis
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Erwinia iniecta
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Erwinia endophytica
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Erwinia gerundensis
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Erwinia psidii
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Enterobacter aerogenes
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Enterobacter cancerogenus
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Enterobacter asburiae
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Enterobacter kobei
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Enterobacter ludwigii
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Enterobacter mori
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Enterobacter soli
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Enterobacter siamensis
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Enterobacter tabaci
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Enterobacter bugandensis
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Citrobacter freundii
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Citrobacter koseri
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Citrobacter amalonaticus
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Citrobacter youngae
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Citrobacter sedlakii
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Citrobacter farmeri
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Citrobacter braakii
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Citrobacter werkmanii
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Citrobacter rodentium
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Citrobacter murliniae
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Citrobacter gillenii
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Citrobacter pasteurii
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Citrobacter bitternis
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Citrobacter portucalensis
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Citrobacter europaeus
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Klebsiella oxytoca
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Klebsiella variicola
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Klebsiella singaporensis
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Klebsiella michiganensis
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Klebsiella grimontii
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Klebsiella granulomatis
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Pectobacterium cacticida
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Pectobacterium wasabiae
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Pectobacterium atrosepticum
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Pectobacterium betavasculorum
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Pectobacterium aroidearum
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Pectobacterium parmentieri
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Cronobacter sakazakii
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Cronobacter turicensis
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Cronobacter muytjensii
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Cronobacter malonaticus
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Cronobacter universalis
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Cronobacter condimenti
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Kosakonia cowanii
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Salmonella bongori
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Salmonella subterranea
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Kosakonia arachidis
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Kosakonia radicincitans
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Kosakonia oryzae
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Kosakonia sacchari
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Kosakonia pseudosacchari
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Kosakonia oryzendophytica
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Kosakonia oryziphila
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Buttiauxella agrestis
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Buttiauxella warmboldiae
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Buttiauxella noackiae
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Buttiauxella izardii
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Buttiauxella gaviniae
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Buttiauxella ferragutiae
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Buttiauxella brennerae
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Providencia alcalifaciens
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Rahnella aquatilis
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Tatumella ptyseos
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Providencia rettgeri
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Providencia rustigianii
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Providencia vermicola
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Providencia burhodogranariea
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Providencia sneebia
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Tatumella terrea
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Tatumella punctata
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Tatumella citrea
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Tatumella morbirosei
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Tatumella saanichensis
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Rahnella inusitata
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Rahnella woolbedingensis
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Rahnella victoriana
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Rahnella bruchi
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Rahnella variigena
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Kluyvera ascorbata
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Kluyvera cryocrescens
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Escherichia hermannii
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Escherichia fergusonii
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Kluyvera georgiana
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Escherichia albertii
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Kluyvera intermedia
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Escherichia marmotae
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Kluyvera intestini
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Shigella dysenteriae
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Raoultella planticola
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Rosenbergiella nectarea
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Lonsdalea quercina
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Shigella flexneri
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Shigella sonnei
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Shigella boydii
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Raoultella ornithinolytica
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Raoultella terrigena
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Raoultella electrica
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Rosenbergiella epipactidis
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Rosenbergiella collisarenosi
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Rosenbergiella australiborealis
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Lonsdalea populi
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Lonsdalea iberica
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Lonsdalea britannica
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Hafnia alvei
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Cedecea davisae
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Mangrovibacter plantisponsor
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Gibbsiella quercinecans
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Franconibacter helveticus
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Rouxiella chamberiensis
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Cedecea lapagei
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Cedecea neteri
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Hafnia paralvei
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Gibbsiella dentisursi
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Franconibacter pulveris
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Mangrovibacter yixingensis
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Hafnia psychrotolerans
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Gibbsiella greigii
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Rouxiella silvae
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Rouxiella badensis
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Franconibacter daqui
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Mangrovibacter phragmitis
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Trabulsiella guamensis
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Shimwellia pseudoproteus
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Lelliottia nimipressuralis
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Pluralibacter gergoviae
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Siccibacter turicensis
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Pseudocitrobacter faecalis
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Phytobacter diazotrophicus
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Trabulsiella odontotermitis
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Shimwellia blattae
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Lelliottia amnigena
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Pluralibacter pyrinus
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Pseudocitrobacter anthropi
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Siccibacter colletis
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Phytobacter ursingii
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Plesiomonas shigelloides
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Obesumbacterium proteus
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Moellerella wisconsensis
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Yokenella regensburgei
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Leclercia adecarboxylata
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Samsonia erythrinae
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Phaseolibacter flectens
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Enterobacillus tribolii
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Nissabacter archeti
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Metakosakonia massiliensis
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Pseudescherichia vulneris
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Flavobacterium acidificum
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Curtobacterium plantarum
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Izhakiella australiensis
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AB480775_s
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NBTC_s
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MTCG_s
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JRUQ_s
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FMIQ_s
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CQER_s
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CQBW_s
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CQBO_s
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CQAW_s
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CP009997_s
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CP007448_s
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CP002505_s
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CP002433_s
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AODU_s
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LVVA_s
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LFHY_s
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KE701379_s
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JYMH_s
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JSXC_s
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JIBQ_s
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JFGT_s
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CP015613_s
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CP014030_s
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CP012685_s
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CP011602_s
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CP009459_s
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AYKS_s
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AXOM_s
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ASZC_s
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AP012551_s
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AKIU_s
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OCMY_s
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MTCH_s
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CP009454_s
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CP002272_s
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AF015258_s
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LGIT_s
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LGHZ_s
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KQ235774_s
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KN150796_s
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JTJJ_s
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JRUP_s
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FWNZ_s
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CP017181_s
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CP011077_s
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CP009458_s
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CP009451_s
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CP005991_s
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CP001657_s
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CP000653_s
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AZYZ_s
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ALXE_s
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AKIT_s
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CP022114_s
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CP016948_s
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EU078564_s
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JN082730_s
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AF024609_s
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GU938599_s
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