Tools

Several bioinformatics tools are provided either as a web-service or standalone software to support your specific needs.

ANI Calculator

Average Nucleotide Identity (ANI) is an online calculator used to compare two prokaryotic genome sequences.

Visit the tool's main page here

OrthoANI-usearch tool

OrthoANI-usearch (OrthoANIu) is a standalone software used to calculate OrthoANI using USEARCH. For large genomes, it is >100 X faster than BLAST-based ANI algorithms.

Visit the tool's main page here

OrthoANI

Orthologous Average Nucleotide Identity Tool (OAT) is a standalone software used to perform OrthoANI algorithm and BLAST calculations to measure the overall similarity between two genomes sequences.

Visit the tool's main page here

ContEst16S

ContEst16S is a web service that enables the detection of potential contaminants in your bacterial or archaeal draft genome assemblies.

Visit the tool's main page here

EzEditor

EzEditor is a phylogenetic sequence alignment editor that enables manual alignment of secondary structure-guided 16S rRNA and codon-guided protein-coding genes.

Visit the tool's main page here

EzEditor2

EzEditor2 is a new and improved iteration of the original EzEditor software.

Visit the tool's main page here

EzBioCloud's Label Replacer

This tool can be used to replace zZ-formated labels with the desired formats in Newick or other text files.

Visit the tool's main page here