Taxonomy

This complete taxonomic hierarchy of Bacteria and Archaea was manually constructed by the EzBioCloud team using numerous maximum likelihood phylogenetic trees based on 16S sequences.
Root;Bacteria;Actinobacteria;Actinomycetia
Propionibacteriales Patrick and McDowell 2015
Actinopolymorphaceae Nouioui et al. 2018
Actinopolymorpha Wang et al. 2001
Actinopolymorpha alba Cao et al. 2009
Actinopolymorpha cephalotaxi Yuan et al. 2010
Actinopolymorpha pittospori Kaewkla and Franco 2011
Actinopolymorpha rutila Wang et al. 2008
Actinopolymorpha singaporensis Wang et al. 2001
Flindersiella Kaewkla and Franco 2011
Flindersiella endophytica Kaewkla and Franco 2011
Tenggerimyces Sun et al. 2015
Tenggerimyces flavus Li et al. 2016
Tenggerimyces mesophilus Sun et al. 2015
Thermasporomyces Yabe et al. 2011
Thermasporomyces composti Yabe et al. 2011
Kribbellaceae Nouioui et al. 2018
Kribbella Park et al. 1999
HM186235_s
Kribbella alba Li et al. 2006
Kribbella albertanoniae Everest et al. 2013
Kribbella aluminosa Carlsohn et al. 2007
Kribbella amoyensis Xu et al. 2012
Kribbella antibiotica Li et al. 2004
Kribbella capetownensis Curtis et al. 2020
Kribbella catacumbae Urzì et al. 2008
Kribbella deserti Sun et al. 2017
Kribbella endophytica Kaewkla and Franco 2013
Kribbella flavida Park et al. 1999
Kribbella ginsengisoli Cui et al. 2010
Kribbella hippodromi Everest and Meyers 2008
Kribbella italica Everest et al. 2015
Kribbella jejuensis Song et al. 2004
Kribbella jiaozuonensis Zhao et al. 2019
Kribbella karoonensis Kirby et al. 2006
Kribbella koreensis (Lee et al. 2000) Sohn et al. 2003
Kribbella lupini Trujillo et al. 2006
Kribbella mirabilis Li et al. 2015
Kribbella monticola Song et al. 2018
Kribbella pittospori Kaewkla and Franco 2016
Kribbella podocarpi Curtis et al. 2018
Kribbella qitaiheensis Guo et al. 2018
Kribbella sancticallisti Urzì et al. 2008
Kribbella sandramycini Park et al. 1999
Kribbella shirazensis Mohammadipanah et al. 2013
Kribbella sindirgiensis Ozdemir-Kocak et al. 2018
Kribbella solani Song et al. 2004
Kribbella soli Ozdemir-Kocak et al. 2017
Kribbella speibonae Curtis et al. 2020
Kribbella swartbergensis Kirby et al. 2006
Kribbella turkmenica Saygin et al. 2019
Kribbella yunnanensis Li et al. 2006
SLWN_s
SNWQ_s
Nocardioidaceae Nesterenko et al. 1990
Aeromicrobium Miller et al. 1991
Aeromicrobium alkaliterrae Yoon et al. 2005
Aeromicrobium camelliae Niu et al. 2015
Aeromicrobium chenweiae Li et al. 2020
Aeromicrobium choanae Ber et al. 2017
Aeromicrobium endophyticum Tuo et al. 2020
Aeromicrobium erythreum Miller et al. 1991
Aeromicrobium fastidiosum (Collins and Stackebrandt 1989) Tamura and Yokota 1994
Aeromicrobium flavum Tang et al. 2008
Aeromicrobium ginsengisoli Kim et al. 2008
Aeromicrobium halocynthiae Kim et al. 2010
Aeromicrobium lacus Sun et al. 2019
Aeromicrobium marinum Bruns et al. 2003
Aeromicrobium massiliense Ramasamy et al. 2014
Aeromicrobium panacisoli Siddiqi et al. 2019
Aeromicrobium panaciterrae Cui et al. 2007
Aeromicrobium phoceense Boxberger et al. 2020
Aeromicrobium phragmitis Li et al. 2021
Aeromicrobium piscarium Zhao et al. 2020
Aeromicrobium ponti Lee and Lee 2008
Aeromicrobium stalagmiti Byeon et al. 2022
Aeromicrobium tamlense Lee and Kim 2007
Aeromicrobium terrae Lin et al. 2021
Aeromicrobium yanjiei Li et al. 2020
CP060587_s
JF206806_s
KI301992_s
LMFJ_s
MIJB_s
SJXM_s
EU861822_g
EU861822_s
HQ538692_g
HQ222289_s
HQ538692_s
Marmoricola Urzì et al. 2000
AUEP_s
LMRF_s
Marmoricola aequoreus Lee 2007
Marmoricola aquaticus de Menezes et al. 2015
Marmoricola aurantiacus Urzì et al. 2000
Marmoricola bigeumensis Dastager et al. 2008
Marmoricola caldifontis Habib et al. 2020
Marmoricola endophyticus Jiang et al. 2017
Marmoricola ginsengisoli Lee et al. 2016
Marmoricola korecus Lee et al. 2011
Marmoricola mangrovicus Li et al. 2019
Marmoricola pocheonensis Lee et al. 2016
Marmoricola scoriae Lee and Lee 2010
Marmoricola silvestris Schumann et al. 2018
Marmoricola solisilvae Kim et al. 2015
Marmoricola terrae Kim et al. 2015
Mumia Lee et al. 2014
Mumia flava Lee et al. 2014
Mumia quercus Chen et al. 2023
Mumia xiangluensis Zhou et al. 2016
Mumia zhuanghuii Tian et al. 2020
Nocardioides Prauser 1976
AB374375_s
AJ576416_s
AY234550_s
BBFA_s
BBFC_s
BDJG_s
CP000509_s
CP045649_s
CP049867_s
CP050902_s
CP053928_s
CU917751_s
CU922508_s
DQ298300_s
DQ298311_s
DQ298320_s
DQ347846_s
DQ906840_s
EF466116_s
EU104290_s
EU539935_s
FJ675505_s
FNFN_s
GQ007842_s
GQ079810_s
GQ263609_s
GQ339902_s
GQ396873_s
GQ396954_s
HE818680_s
HM557985_s
JAER_s
JF016647_s
JF038093_s
JF044330_s
JF044725_s
JF048743_s
JF066274_s
JF073933_s
JF079446_s
JF131355_s
JF135820_s
JF137939_s
JF176581_s
JF202912_s
JF319235_s
JF417721_s
JF417723_s
JF417836_s
JN038307_s
JN178379_s
JQ408143_s
JQ428632_s
JQ428792_s
JQ957838_s
JX079124_s
JX079199_s
JX949464_s
JZDQ_s
KB822597_s
LMDE_s
LMFI_s
LMHJ_s
LMIA_s
LMSU_s
Nocardioides acrostichi Chen et al. 2021
Nocardioides aestuarii Yi and Chun 2004
Nocardioides agariphilus Dastager et al. 2008
Nocardioides agrisoli Wang et al. 2017
Nocardioides albertanoniae Alias-Villegas et al. 2013
Nocardioides albidus Singh et al. 2016
Nocardioides albus Prauser 1976
Nocardioides alcanivorans Mitzscherling et al. 2022
Nocardioides alkalitolerans Yoon et al. 2005
Nocardioides allogilvus Zhang et al. 2018
Nocardioides alpinus Zhang et al. 2012
Nocardioides anomalus Park et al. 2020
Nocardioides antarcticus Deng et al. 2015
Nocardioides antri Lee et al. 2021
Nocardioides aquaticus Lawson et al. 2000
Nocardioides aquiterrae Yoon et al. 2004
Nocardioides aromaticivorans Kubota et al. 2005
Nocardioides astragali Xu et al. 2018
Nocardioides baculatus Chhetri et al. 2021
Nocardioides baekrokdamisoli Lee et al. 2016
Nocardioides bigeumensis Dastager et al. 2008
Nocardioides bruguierae Chen et al. 2023
Nocardioides caeni Yoon et al. 2009
Nocardioides campestrisoli Zhou et al. 2022
Nocardioides carbamazepini Benedek et al. 2022
Nocardioides caricicola Song et al. 2011
Nocardioides cavernae Han et al. 2017
Nocardioides cavernaquae Zhu et al. 2022
Nocardioides convexus Park et al. 2020
Nocardioides conyzicola Han et al. 2013
Nocardioides coralli Shi et al. 2022
Nocardioides currus Park et al. 2018
Nocardioides cynanchi Suh et al. 2021
Nocardioides daecheongensis Lim et al. 2014
Nocardioides daedukensis Yoon et al. 2010
Nocardioides daeguensis Cui et al. 2013
Nocardioides daejeonensis Woo et al. 2012
Nocardioides daphniae Tóth et al. 2008
Nocardioides deserti Tuo et al. 2015
Nocardioides dilutus Dastager et al. 2009
Nocardioides dokdonensis Park et al. 2008
Nocardioides donggukensis Kim et al. 2021
Nocardioides dongkuii Cheng et al. 2021
Nocardioides dongxiaopingii Zhang et al. 2020
Nocardioides dubius Yoon et al. 2005
Nocardioides eburneiflavus Roh et al. 2020
Nocardioides echinoideorum Lin et al. 2015
Nocardioides endophyticus Han et al. 2013
Nocardioides euryhalodurans Roh et al. 2020
Nocardioides exalbidus Li et al. 2007
Nocardioides faecalis Zhang et al. 2023
Nocardioides ferulae Liu et al. 2019
Nocardioides flava Singh and Yin 2016
Nocardioides flavescens Zhang et al. 2020
Nocardioides flavus Wang et al. 2016
Nocardioides fonticola Chou et al. 2008
Nocardioides furvisabuli Lee 2007
Nocardioides ganghwensis Yi and Chun 2004
Nocardioides gansuensis Wu et al. 2019
Nocardioides gilvus Zhang et al. 2017
Nocardioides ginkgobilobae Xu et al. 2016
Nocardioides ginsengagri Lee et al. 2012
Nocardioides ginsengisegetis Im et al. 2011
Nocardioides ginsengisoli Cui et al. 2009
Nocardioides glacieisoli Liu et al. 2015
Nocardioides guangzhouensis Chen et al. 2020
Nocardioides halotolerans Dastager et al. 2009
Nocardioides hankookensis Yoon et al. 2008
Nocardioides houyundeii Wang et al. 2018
Nocardioides humi Kim et al. 2009
Nocardioides humilatus Lee et al. 2022
Nocardioides hungaricus Tóth et al. 2011
Nocardioides hwasunensis Lee et al. 2008
Nocardioides immobilis Lu et al. 2017
Nocardioides insulae Yoon et al. 2007
Nocardioides intraradicalis Huang et al. 2016
Nocardioides iriomotensis Yamamura et al. 2011
Nocardioides islandensis Dastager et al. 2009
Nocardioides jejuensis Jang et al. 2019
Nocardioides jensenii (Suzuki and Komagata 1983) Collins et al. 1989
Nocardioides jiangsuensis Wang et al. 2023
Nocardioides jishulii Dong et al. 2020
Nocardioides kandeliae Liu et al. 2017
Nocardioides kongjuensis Yoon et al. 2006
Nocardioides koreensis Dastager et al. 2008
Nocardioides kribbensis Yoon et al. 2005
Nocardioides lacusdianchii Xiao et al. 2021
Nocardioides lentus Yoon et al. 2006
Nocardioides lianchengensis Zhang et al. 2012
Nocardioides lijunqiniae Cheng et al. 2021
Nocardioides litoris Lee et al. 2017
Nocardioides litorisoli Wang et al. 2017
Nocardioides luteus Prauser 1985
Nocardioides luti Yoon et al. 2022
Nocardioides malaquae Zhang et al. 2021
Nocardioides mangrovi Chen et al. 2022
Nocardioides maradonensis Lee et al. 2011
Nocardioides marinisabuli Lee et al. 2007
Nocardioides marinquilinus Cho et al. 2013
Nocardioides marinus Choi et al. 2007
Nocardioides marmotae Zhang et al. 2023
Nocardioides massiliensis Dubourg et al. 2016
Nocardioides mesophilus Dastager et al. 2010
Nocardioides montaniterrae Srinivasan et al. 2015
Nocardioides nanhaiensis Zhang et al. 2014
Nocardioides nematodiphilus Zhang et al. 2022
Nocardioides nitrophenolicus Yoon et al. 1999
Nocardioides ochotonae Zhou et al. 2022
Nocardioides okcheonensis Kim et al. 2023
Nocardioides oleivorans Schippers et al. 2005
Nocardioides opuntiae Lee and Seong 2014
Nocardioides pacificus Fan et al. 2014
Nocardioides pakistanensis Amin et al. 2016
Nocardioides palaemonis Kim et al. 2022
Nocardioides panacihumi An et al. 2007
Nocardioides panacis Park et al. 2022
Nocardioides panacisoli Cho et al. 2010
Nocardioides panaciterrulae Kim et al. 2019
Nocardioides pantholopis Zhou et al. 2022
Nocardioides panzhihuensis Qin et al. 2012
Nocardioides paucivorans Ahn et al. 2014
Nocardioides pelophilus Yan et al. 2018
Nocardioides perillae Du et al. 2013
Nocardioides phosphati Xie et al. 2017
Nocardioides piscis Hyun et al. 2022
Nocardioides plantarum Collins et al. 1994
Nocardioides psychrotolerans Liu et al. 2013
Nocardioides pyridinolyticus Yoon et al. 1997
Nocardioides rotundus Wang et al. 2016
Nocardioides rubriscoriae Lee and Lee 2014
Nocardioides salarius Kim et al. 2008
Nocardioides salsibiostraticola Cho et al. 2013
Nocardioides sambongensis Hwang et al. 2020
Nocardioides sediminis Dastager et al. 2009
Nocardioides seonyuensis Roh et al. 2020
Nocardioides silvaticus Li et al. 2019
Nocardioides simplex (Jensen 1934) O'Donnell et al. 1983
Nocardioides soli Sun et al. 2014
Nocardioides solisilvae Sultanpuram et al. 2015
Nocardioides sonneratiae Li et al. 2017
Nocardioides speluncae Fang et al. 2019
Nocardioides stalactiti Zhou et al. 2021
Nocardioides suum Lee et al. 2017
Nocardioides szechwanensis Liu et al. 2013
Nocardioides taihuensis Qu et al. 2017
Nocardioides terrae Zhang et al. 2009
Nocardioides terrigena Yoon et al. 2007
Nocardioides thalensis Khan et al. 2017
Nocardioides tritolerans Dastager et al. 2009
Nocardioides ultimimeridianus Lee et al. 2011
Nocardioides ungokensis Zhao et al. 2015
Nocardioides vastitatis Liu et al. 2020
Nocardioides yefusunii Huang et al. 2019
Nocardioides zeae Glaeser et al. 2014
Nocardioides zeicaulis Kämpfer et al. 2016
Nocardioides zhouii Zhang et al. 2019
QAYJ_s
QBKO_s
SPUI_s
SPUJ_s
STGK_s
VFNJ_s
VFNY_s
VMSC_s
VSSA_s
WSEK_s
Solicola Lopez Marin et al. 2023
Solicola gregarius Lopez Marin et al. 2023
Propionibacteriaceae Delwiche 1957
Acidipropionibacterium Scholz and Kilian 2016
Acidipropionibacterium acidipropionici (Orla-Jensen 1909) Scholz and Kilian 2016
Acidipropionibacterium damnosum (Lucena-Padrós et al. 2014) Scholz and Kilian 2016
Acidipropionibacterium jensenii (van Niel 1928) Scholz and Kilian 2016
Acidipropionibacterium microaerophilum (Koussémon et al. 2001) Scholz and Kilian 2016
Acidipropionibacterium olivae (Lucena-Padrós et al. 2014) Scholz and Kilian 2016
Acidipropionibacterium thoenii (van Niel 1928) Scholz and Kilian 2016
Acidipropionibacterium timonense Togo et al. 2019
Acidipropionibacterium virtanenii Deptula et al. 2018
Aestuariimicrobium Jung et al. 2007
Aestuariimicrobium ganziense Geng et al. 2021
Aestuariimicrobium kwangyangense Jung et al. 2007
Aestuariimicrobium soli Chen et al. 2018
AF281118_g
AF281118_s
Arachnia Pine and Georg 1969
Arachnia propionica (Buchanan and Pine 1962) Pine and Georg 1969
Arachnia rubra (Saito et al. 2018) Tindall 2019
JQ455345_s
JQ456098_s
Pseudopropionibacterium massiliense Belkacemi et al. 2019
ATFL_g
ATFL_s
Propionibacterium westphaliense Schlattmann et al. 2018
Auraticoccus Alonso-Vega et al. 2011
Auraticoccus cholistanensis Cheema et al. 2020
Auraticoccus monumenti Alonso-Vega et al. 2011
Brevilactibacter Wenning et al. 2020
AB637325_s
Brevilactibacter coleopterorum Hyun et al. 2021
Brevilactibacter flavus Wenning et al. 2020
Brevilactibacter sinopodophylli (Zhang et al. 2017) Wenning et al. 2020
CU920907_s
EU266885_s
EU812987_s
GQ062397_s
GQ062880_s
JQ191103_s
Brooklawnia Rainey et al. 2006
AB198446_s
Brooklawnia cerclae Rainey et al. 2006
FJ670877_s
GQ066964_s
HQ183923_s
Cutibacterium Scholz and Kilian 2016
AFUN_s
Cutibacterium acnes (Gilchrist 1900) Scholz and Kilian 2016
Cutibacterium avidum (Eggerth 1935) Scholz and Kilian 2016
Cutibacterium granulosum (Prévot 1938) Scholz and Kilian 2016
Cutibacterium modestum Dekio et al. 2020
Cutibacterium namnetense (Aubin et al. 2016) Nouioui et al. 2018
Cutibacterium porci Wylensek et al. 2021
Desertihabitans Sun et al. 2019
Desertihabitans aurantiacus Sun et al. 2019
Desertihabitans brevis Liu et al. 2020
DQ125551_g
AB198455_s
AB288888_s
DQ125551_s
GU227180_s
Enemella Bernard et al. 2020
Enemella dayhoffiae Bernard et al. 2020
Enemella evansiae Bernard et al. 2020
EU535598_g
EU535598_s
FJ675214_g
FJ675214_s
GQ067216_s
FR874241_g
FR874241_s
GQ358822_g
GQ358822_s
Granulicoccus Maszenan et al. 2007
Granulicoccus phenolivorans Maszenan et al. 2007
Luteococcus Tamura et al. 1994
Luteococcus japonicus Tamura et al. 1994
Luteococcus peritonei Collins et al. 2000
Luteococcus sanguinis Collins et al. 2003
Luteococcus sediminum Fan et al. 2014
Mariniluteicoccus Zhang et al. 2014
Mariniluteicoccus endophyticus Liu et al. 2016
Mariniluteicoccus flavus Zhang et al. 2014
Microlunatus Nakamura et al. 1995
AM697105_s
CP046122_s
DQ366006_s
EF522316_s
EU289418_s
EU289505_s
EU289514_s
EU861867_s
FJ478884_s
FJ595541_s
Friedmanniella luteola Iwai et al. 2010
HM565048_s
HM844402_s
HQ910289_s
JF097023_s
Microlunatus aerolatus (Kim et al. 2016) Nouioui et al. 2018
Microlunatus antarcticus (Schumann et al. 1997) Nouioui et al. 2018
Microlunatus aurantiacus Wang et al. 2008
Microlunatus capsulatus (Maszenan et al. 1999) Nouioui et al. 2018
Microlunatus cavernae Cheng et al. 2013
Microlunatus elymi Son et al. 2020
Microlunatus endophyticus Tuo et al. 2016
Microlunatus flavus (Zhang et al. 2013) Nouioui et al. 2018
Microlunatus ginsengisoli Cui et al. 2007
Microlunatus kandeliicorticis (Tuo et al. 2016) Yang and Zhi 2020
Microlunatus lacustris (Lawson et al. 2000) Nouioui et al. 2018
Microlunatus lucidus (Iwai et al. 2010) Nouioui et al. 2018
Microlunatus nigridraconis Zhang et al. 2016
Microlunatus okinawensis (Iwai et al. 2010) Nouioui et al. 2018
Microlunatus panaciterrae An et al. 2008
Microlunatus parietis Kämpfer et al. 2010
Microlunatus phosphovorus Nakamura et al. 1995
Microlunatus sagamiharensis (Iwai et al. 2010) Nouioui et al. 2018
Microlunatus soli Kämpfer et al. 2010
Microlunatus speluncae Xie et al. 2020
Microlunatus spumicola (Maszenan et al. 1999) Nouioui et al. 2018
Microlunatus terrae Lee and Kim 2012
Micropruina Shintani et al. 2000
Micropruina glycogenica Shintani et al. 2000
Naumannella Rieser et al. 2012
Naumannella cuiyingiana Tian et al. 2017
Naumannella halotolerans Rieser et al. 2012
Naumannella huperziae Sun et al. 2017
Nigerium Traore et al. 2016
Nigerium massiliense Traore et al. 2016
Parenemella Bernard et al. 2020
Parenemella sanctibonifatiensis Bernard et al. 2020
Propionibacterium Orla-Jensen 1909
AB264627_s
JQ085632_s
Propionibacterium acidifaciens Downes and Wade 2009
Propionibacterium australiense Bernard et al. 2002
Propionibacterium cyclohexanicum Kusano et al. 1997
Propionibacterium freudenreichii van Niel 1928
Propionibacterium ruminifibrarum Vaidya et al. 2019
Propionicicella Bae et al. 2006
Propionicicella superfundia Bae et al. 2006
Propioniciclava Sugawara et al. 2011
DQ378203_s
FJ535513_s
FM178531_s
HQ860492_s
Propioniciclava soli Li et al. 2022
Propioniciclava tarda Sugawara et al. 2011
Propionicimonas Akasaka et al. 2003
AQYY_s
FM178524_s
HM773522_s
Propionicimonas ferrireducens Zhou et al. 2018
Propionicimonas paludicola Akasaka et al. 2003
Propioniferax Yokota et al. 1994
FM875244_s
JF229178_s
Propioniferax innocua (Pitcher and Collins 1992) Yokota et al. 1994
Propionimicrobium Stackebrandt et al. 2002
AB603817_s
EU980607_s
JF132190_s
LT706985_s
Propionimicrobium lymphophilum (Torrey 1916) Stackebrandt et al. 2002
Raineyella Pikuta et al. 2016
AY221602_s
Raineyella antarctica Pikuta et al. 2016
Raineyella fluvialis Kim et al. 2020
Tessaracoccus Maszenan et al. 1999
DQ521508_s
FJ672019_s
FM872539_s
HQ232445_s
JHVD_s
JN713463_s
JN713466_s
JN713494_s
MTHC_s
RQYT_s
RQZG_s
Tessaracoccus antarcticus Zhou et al. 2020
Tessaracoccus aquimaris Tak et al. 2018
Tessaracoccus arenae Thongphrom et al. 2017
Tessaracoccus bendigoensis Maszenan et al. 1999
Tessaracoccus coleopterorum Hyun et al. 2021
Tessaracoccus defluvii Srinivasan et al. 2017
Tessaracoccus flavescens Lee and Lee 2008
Tessaracoccus flavus Kumari et al. 2016
Tessaracoccus lapidicaptus Puente-Sánchez et al. 2014
Tessaracoccus lubricantis Kämpfer et al. 2009
Tessaracoccus massiliensis Seck et al. 2016
Tessaracoccus nasisuum Schlattmann et al. 2018
Tessaracoccus oleiagri Cai et al. 2011
Tessaracoccus palaemonis Kim et al. 2022
Tessaracoccus profundi Finster et al. 2009
Tessaracoccus rhinocerotis Li et al. 2016
Tessaracoccus terricola Chaudhary and Kim 2018
Tessaracoccus timonensis Fall et al. 2019
Vaginimicrobium Diop et al. 2020
Vaginimicrobium propionicum Diop et al. 2020
Data type count
  • 0
    Genome
  • 0
    16S rRNA