Taxonomy

This complete taxonomic hierarchy of Bacteria and Archaea was manually constructed by the EzBioCloud team using numerous maximum likelihood phylogenetic trees based on 16S sequences.
Actinomycetia (Stackebrandt et al. 1997) Salam et al. 2020
Acidothermales Sen et al. 2014
Acidothermaceae Rainey et al. 1997
Acidothermus Mohagheghi et al. 1986
Actinocatenisporales Salam et al. 2020
Actinocatenisporaceae Salam et al. 2020
Actinocatenispora Thawai et al. 2006
Actinomarinales Ghai et al. 2013
Actinomarinaceae Ghai et al. 2013
Actinomarina Ghai et al. 2013
Actinomycetales Buchanan 1917
Actinomycetaceae Buchanan 1918
Actinomyces Harz 1877
Boudabousia Nouioui et al. 2018
Bowdeniella Nouioui et al. 2018
Buchananella Nouioui et al. 2018
Gleimia Nouioui et al. 2018
Mobiluncus Spiegel and Roberts 1984
Nanchangia Liu et al. 2021
Pauljensenia Nouioui et al. 2018
Schaalia Nouioui et al. 2018
Scrofimicrobium Wylensek et al. 2021
Varibaculum Hall et al. 2003
Winkia Nouioui et al. 2018
Arcanobacteriaceae Salam et al. 2020
Actinobaculum Lawson et al. 1997
Actinotignum Yassin et al. 2015
Ancrocorticia Xu et al. 2020
Arcanobacterium Collins et al. 1983
Changpingibacter Jiao et al. 2021
Flaviflexus Du et al. 2013
Fudania Zhu et al. 2019
Neoactinobaculum Belkacemi et al. 2019
Peptidiphaga Beall et al. 2021
Trueperella Yassin et al. 2011
Antricoccales Salam et al. 2020
Antricoccaceae Nouioui et al. 2018
Antricoccus Lee 2015
Cumulibacter Huang et al. 2017
Epidermidibacterium Lee et al. 2018
Aquipuribacterales Salam et al. 2020
Aquipuribacteraceae Salam et al. 2020
Aquipuribacter Tóth et al. 2012
Beutenbergiales Salam et al. 2020
Beutenbergiaceae Zhi et al. 2009
Beutenbergia Groth et al. 1999
Litorihabitans Hamada et al. 2019
Miniimonas Ue et al. 2011
Salana von Wintzingerode et al. 2001
Serinibacter Hamada et al. 2009
Bifidobacteriales Stackebrandt et al. 1997
Bifidobacteriaceae Stackebrandt et al. 1997
Aeriscardovia Simpson et al. 2004
Alloscardovia Huys et al. 2007
Bifidobacterium Orla-Jensen 1924
Bombiscardovia Killer et al. 2014
Galliscardovia Pechar et al. 2017
Gardnerella Greenwood and Pickett 1980
Neoscardovia García-Aljaro et al. 2012
Parascardovia Jian and Dong 2002
Pseudoscardovia Killer et al. 2014
Scardovia Jian and Dong 2002
Bogoriellales Salam et al. 2020
Bogoriellaceae Schumann and Stackebrandt 2000
Bogoriella Groth et al. 1997
Georgenia Altenburger et al. 2002
Pengzhenrongella Kim et al. 2021
Brevibacteriales Salam et al. 2020
Brevibacteriaceae Breed 1953
Brevibacterium Breed 1953
Sediminivirga Zhang et al. 2016
Spelaeicoccus Lee 2013
Catenulisporales Donadio et al. 2015
Actinospicaceae Cavaletti et al. 2006
Actinocrinis Kim et al. 2017
Actinospica Cavaletti et al. 2006
Catenulisporaceae Busti et al. 2006
Catenulispora Busti et al. 2006
Cellulomonadales Salam et al. 2020
Actinotaleaceae Salam et al. 2020
Actinotalea Yi et al. 2007
Pseudactinotalea Cho et al. 2017
Cellulomonadaceae Stackebrandt and Prauser 1991
Cellulomonas Bergey et al. 1923
Jonesiaceae Stackebrandt et al. 1997
Flavimobilis Nouioui et al. 2018
Jonesia Rocourt and Stackebrandt 1987
Populibacterium Li et al. 2016
Sanguibacter Fernández-Garayzábal et al. 1995
Timonella Mishra et al. 2016
Oerskoviaceae Salam et al. 2020
Oerskovia Prauser et al. 1970
Paraoerskovia Khan et al. 2009
Sediminihabitans Hamada et al. 2012
Tropicihabitans Hamada et al. 2015
Promicromonosporaceae Rainey et al. 1997
Antribacter Zhang et al. 2019
Cellulosimicrobium Schumann et al. 2001
Isoptericola Stackebrandt et al. 2004
Krasilnikoviella Nishijima et al. 2017
Luteimicrobium Hamada et al. 2010
Myceligenerans Cui et al. 2004
Promicromonospora Krassilnikov et al. 1961
Puerhibacterium Yang et al. 2021
Xylanimonas Rivas et al. 2003
Rarobacteraceae Stackebrandt and Schumann 2000
Rarobacter Yamamoto et al. 1988
Cryptosporangiales Nouioui et al. 2018
Cryptosporangiaceae Zhi et al. 2009
Cryptosporangium Tamura et al. 1998
Fodinicola Carlsohn et al. 2008
Demequinales Salam et al. 2020
Demequinaceae Ue et al. 2011
Demequina Yi et al. 2007
Dermabacterales Salam et al. 2020
Dermabacteraceae Stackebrandt et al. 1997
Brachybacterium Collins et al. 1988
Dermabacter Jones and Collins 1989
Devriesea Martel et al. 2008
Helcobacillus Renvoise et al. 2009
Dermatophilales Salam et al. 2020
Arsenicicoccaceae Salam et al. 2020
Arsenicicoccus Collins et al. 2004
Dermacoccaceae Schumann and Stackebrandt 2000
Allobranchiibius Ai et al. 2017
Barrientosiimonas Lee et al. 2013
Branchiibius Sugimoto et al. 2011
Calidifontibacter Ruckmani et al. 2011
Demetria Groth et al. 1997
Dermacoccus Stackebrandt et al. 1995
Flexivirga Anzai et al. 2012
Leekyejoonella Lee et al. 2020
Luteipulveratus Ara et al. 2010
Metallococcus Lim et al. 2021
Rudaeicoccus Kim et al. 2013
Yimella Tang et al. 2010
Dermatophilaceae Austwick 1958
Agilicoccus Yin et al. 2021
Austwickia Hamada et al. 2011
Dermatophilus (Van Saceghem 1915) Gordon 1964
Gephyromycinifex Zhu et al. 2021
Kineosphaera Liu et al. 2002
Mobilicoccus Hamada et al. 2011
Piscicoccus Hamada et al. 2011
Tonsilliphilus Azuma et al. 2013
Intrasporangiaceae Rainey et al. 1997
Fodinibacter Wang et al. 2009
Humibacillus Kageyama et al. 2008
Intrasporangium Kalakoutskii et al. 1967
Janibacter Martin et al. 1997
Knoellia Groth et al. 2002
Kribbia Jung et al. 2006
Lapillicoccus Lee and Lee 2007
Marihabitans Kageyama et al. 2008
Ornithinibacter Xiao et al. 2011
Ornithinicoccus Groth et al. 1999
Oryzihumus Kageyama et al. 2005
Oryzobacter Kim et al. 2015
Pedococcus Nouioui et al. 2018
Phycicoccus Lee 2006
Segeticoccus Lee and Whang 2020
Terrabacter Collins et al. 1989
Terracoccus Prauser et al. 1997
Tetrasphaera Maszenan et al. 2000
Kytococcaceae Nouioui et al. 2018
Kytococcus Stackebrandt et al. 1995
Ornithinimicrobiaceae Nouioui et al. 2018
Ornithinimicrobium Groth et al. 2001
Serinicoccus Yi et al. 2004
Frankiales Sen et al. 2014
Carbonactinosporaceae Volpiano et al. 2021
Carbonactinospora Volpiano et al. 2021
Frankiaceae Becking 1970
Frankia Brunchorst 1886
Parafrankia Gtari et al. 2023
Protofrankia Gtari et al. 2023
Pseudofrankia Gtari et al. 2023
Geodermatophilales Sen et al. 2014
Geodermatophilaceae Normand 2006
Blastococcus Ahrens and Moll 1970
Geodermatophilus Luedemann 1968
Goekera Montero-Calasanz et al. 2023
Klenkia Montero-Calasanz et al. 2018
Modestobacter Mevs et al. 2000
Glycomycetales Labeda 2015
Glycomycetaceae Rainey et al. 1997
Glycomyces Labeda et al. 1985
Haloglycomyces Guan et al. 2009
Natronoglycomyces Sorokin et al. 2021
Salilacibacter Li et al. 2016
Salininema Nikou et al. 2015
Stackebrandtia Labeda and Kroppenstedt 2005
Jatrophihabitantales Salam et al. 2020
Jatrophihabitantaceae Nouioui et al. 2018
Jatrophihabitans Madhaiyan et al. 2013
Jiangellales Tang et al. 2015
Jiangellaceae Tang et al. 2011
Haloactinopolyspora Tang et al. 2011
Jiangella Song et al. 2005
Phytoactinopolyspora Li et al. 2015
Kineosporiales Kämpfer 2015
Kineosporiaceae Zhi et al. 2009
Angustibacter Tamura et al. 2010
Kineococcus Yokota et al. 1993
Kineosporia Pagani and Parenti 1978
Pseudokineococcus Jurado et al. 2011
Quadrisphaera Maszenan et al. 2005
Thalassiella Lee et al. 2017
Microbacteriales Salam et al. 2020
Microbacteriaceae Park et al. 1995
Agreia Evtushenko et al. 2001
Agrococcus Groth et al. 1996
Agromyces Gledhill and Casida 1969
Alpinimonas Schumann et al. 2012
Amnibacterium Kim and Lee 2011
Ancillula Strassert et al. 2012
Aquiluna Pitt et al. 2021
Arenivirga Hamada et al. 2017
Aurantimicrobium Nakai et al. 2015
Caespitibacter Vandamme et al. 2022
Canibacter Aravena-Román et al. 2014
Clavibacter Davis et al. 1984
Cnuibacter Zhou et al. 2016
Compostimonas Kim et al. 2012
Conyzicola Kim et al. 2014
Cryobacterium Suzuki et al. 1997
Curtobacterium Yamada and Komagata 1972
Diaminobutyricibacter Kim et al. 2014
Diaminobutyricimonas Jang et al. 2013
Flaviluna Hahn 2009
Frigoribacterium Kämpfer et al. 2000
Frondihabitans Greene et al. 2009
Galbitalea Kim et al. 2014
Glaciibacter Katayama et al. 2009
Glaciihabitans Li et al. 2014
Gryllotalpicola Kim et al. 2012
Gulosibacter Manaia et al. 2004
Herbiconiux Behrendt et al. 2011
Homoserinibacter Kim et al. 2014
Homoserinimonas Kim et al. 2012
Huakuichenia Zhang et al. 2016
Humibacter Vaz-Moreira et al. 2008
Klugiella Cook et al. 2008
Labedella Lee 2007
Lacisediminihabitans Zhuo et al. 2020
Leifsonia Evtushenko et al. 2000
Leucobacter Takeuchi et al. 1996
Limnoluna Hahn 2009
Luethyella O'Neal et al. 2017
Lysinibacter Tuo et al. 2015
Lysinimonas Jang et al. 2013
Marisediminicola Li et al. 2010
Microbacterium Orla-Jensen 1919
Microcella Tiago et al. 2005
Microterricola Matsumoto et al. 2008
Mycetocola Tsukamoto et al. 2001
Naasia Weon et al. 2013
Okibacterium Evtushenko et al. 2002
Parafrigoribacterium Kong et al. 2016
Planctomonas Liu et al. 2019
Planktoluna Hahn 2009
Plantibacter Behrendt et al. 2002
Pontimonas Jang et al. 2013
Protaetiibacter Heo et al. 2019
Pseudoclavibacter Manaia et al. 2004
Pseudolysinimonas Heo et al. 2019
Puzihella Sheu et al. 2017
Rathayibacter Zgurskaya et al. 1993
Rhodoglobus Sheridan et al. 2003
Rhodoluna Hahn et al. 2014
Rudaibacter Kim et al. 2013
Salinibacterium Han et al. 2003
Schumannella An et al. 2009
Subtercola Männistö et al. 2000
Terrimesophilobacter Hahn et al. 2021
Tropherymataceae Nouioui et al. 2018
Tropheryma La Scola et al. 2001
Micrococcales Prévot 1940
Micrococcaceae Pribram 1929
Acaricomes Pukall et al. 2006
Arthrobacter Conn and Dimmick 1947
Auritidibacter Yassin et al. 2011
Citricoccus Altenburger et al. 2002
Enteractinococcus Cao et al. 2012
Falsarthrobacter Busse and Moore 2018
Galactobacter Hanhe et al. 2019
Garicola Lo et al. 2015
Glutamicibacter Busse et al. 2016
Haematomicrobium Schumann and Busse 2017
Kocuria Stackebrandt et al. 1995
Micrococcoides Tóth et al. 2017
Micrococcus Cohn 1872
Neomicrococcus Prakash et al. 2015
Nesterenkonia Stackebrandt et al. 1995
Paenarthrobacter Busse et al. 2016
Paeniglutamicibacter Busse et al. 2016
Pseudarthrobacter Busse et al. 2016
Psychromicrobium Schumann et al. 2017
Renibacterium Sanders and Fryer 1980
Rothia Georg and Brown 1967
Sinomonas Zhou et al. 2009
Specibacter Lee and Schumann 2019
Tersicoccus Vaishampayan et al. 2013
Yaniella Li et al. 2008
Zafaria Amin et al. 2021
Zhihengliuella Zhang et al. 2007
Micromonosporales Genilloud 2015
Micromonosporaceae Krasil'nikov 1938
Actinoplanes Couch 1950
Allocatelliglobosispora Lee and Lee 2011
Allorhizocola Sun et al. 2019
Asanoa Lee and Hah 2002
Catellatospora Asano and Kawamoto 1986
Catelliglobosispora Ara et al. 2008
Catenuloplanes Yokota et al. 1993
Couchioplanes Tamura et al. 1994
Dactylosporangium Thiemann et al. 1967
Hamadaea Ara et al. 2008
Jidongwangia Han et al. 2023
Krasilnikovia Ara and Kudo 2007
Longispora Matsumoto et al. 2003
Luedemannella Ara and Kudo 2007
Mangrovihabitans Liu et al. 2017
Micromonospora Ørskov 1923
Natronosporangium Sorokin et al. 2022
Nucisporomicrobium Han et al. 2022
Phytohabitans Inahashi et al. 2010
Pilimelia Kane 1966
Planosporangium Wiese et al. 2008
Plantactinospora Qin et al. 2009
Polymorphospora Tamura et al. 2006
Pseudosporangium Ara et al. 2008
Rhizocola Matsumoto et al. 2014
Rugosimonospora Monciardini et al. 2009
Salinispora Maldonado et al. 2005
Spirilliplanes Tamura et al. 1997
Virgisporangium Tamura et al. 2001
Motilibacterales Salam et al. 2020
Motilibacter Lee 2012
Vallicoccaceae Feng et al. 2021
Vallicoccus Feng et al. 2021
Mycobacteriales Janke 1924
Corynebacteriaceae Lehmann and Neumann 1907
Corynebacterium Lehmann and Neumann 1896
Dietziaceae Rainey et al. 1997
Dietzia Rainey et al. 1995
Gordoniaceae Nouioui et al. 2018
Gordonia (ex Tsukamura) Stackebrandt et al. 1989
Jongsikchunia Nouioui et al. 2018
Williamsia Kämpfer et al. 1999
Hoyosellaceae Salam et al. 2020
Hoyosella Jurado et al. 2009
Lolliginicoccus Miyanishi et al. 2023
Lawsonellaceae Nouioui et al. 2018
Lawsonella Bell et al. 2016
Mycobacteriaceae Chester 1897
Mycobacterium Lehmann and Neumann 1896
Nocardiaceae Castellani and Chalmers 1919
Aldersonia Nouioui et al. 2018
Antrihabitans Lee et al. 2020
Millisia Soddell et al. 2006
Nocardia Trevisan 1889
Prescottella Sangal et al. 2022
Rhodococcus Zopf 1891
Skermania Chun et al. 1997
Smaragdicoccus Adachi et al. 2007
Spelaeibacter Kim et al. 2022
Segniliparaceae Butler et al. 2005
Segniliparus Butler et al. 2005
Tomitellaceae Salam et al. 2020
Tomitella Katayama et al. 2010
Tsukamurellaceae Rainey et al. 1997
Tsukamurella Collins et al. 1988
Nakamurellales Sen et al. 2014
Nakamurellaceae Tao et al. 2004
Nakamurella Tao et al. 2004
Nanopelagicales Neuenschwander et al. 2018
Nanopelagicaceae Neuenschwander et al. 2018
Nanopelagicus Neuenschwander et al. 2018
Planktophila Jezbera et al. 2009
Phytomonosporales Salam et al. 2020
Phytomonosporaceae Salam et al. 2020
Actinorhabdospora Mingma et al. 2016
Phytomonospora Li et al. 2011
Propionibacteriales Patrick and McDowell 2015
Actinopolymorphaceae Nouioui et al. 2018
Actinopolymorpha Wang et al. 2001
Flindersiella Kaewkla and Franco 2011
Tenggerimyces Sun et al. 2015
Thermasporomyces Yabe et al. 2011
Kribbellaceae Nouioui et al. 2018
Kribbella Park et al. 1999
Nocardioidaceae Nesterenko et al. 1990
Aeromicrobium Miller et al. 1991
Marmoricola Urzì et al. 2000
Mumia Lee et al. 2014
Nocardioides Prauser 1976
Solicola Lopez Marin et al. 2023
Propionibacteriaceae Delwiche 1957
Acidipropionibacterium Scholz and Kilian 2016
Aestuariimicrobium Jung et al. 2007
Arachnia Pine and Georg 1969
Auraticoccus Alonso-Vega et al. 2011
Brevilactibacter Wenning et al. 2020
Brooklawnia Rainey et al. 2006
Cutibacterium Scholz and Kilian 2016
Desertihabitans Sun et al. 2019
Enemella Bernard et al. 2020
Granulicoccus Maszenan et al. 2007
Luteococcus Tamura et al. 1994
Mariniluteicoccus Zhang et al. 2014
Microlunatus Nakamura et al. 1995
Micropruina Shintani et al. 2000
Naumannella Rieser et al. 2012
Nigerium Traore et al. 2016
Parenemella Bernard et al. 2020
Propionibacterium Orla-Jensen 1909
Propionicicella Bae et al. 2006
Propioniciclava Sugawara et al. 2011
Propionicimonas Akasaka et al. 2003
Propioniferax Yokota et al. 1994
Propionimicrobium Stackebrandt et al. 2002
Raineyella Pikuta et al. 2016
Tessaracoccus Maszenan et al. 1999
Vaginimicrobium Diop et al. 2020
Pseudonocardiales Labeda and Goodfellow 2015
Pseudonocardiaceae Embley et al. 1989
Actinoalloteichus Tamura et al. 2000
Actinocrispum Hatano et al. 2016
Actinokineospora Hasegawa 1988
Actinomycetospora Jiang et al. 2008
Actinophytocola Indananda et al. 2010
Actinopolyspora Gochnauer et al. 1975
Actinorectispora Quadri et al. 2016
Actinosynnema Hasegawa et al. 1978
Allokutzneria Labeda and Kroppenstedt 2008
Allosaccharopolyspora Teo et al. 2021
Amycolatopsis Lechevalier et al. 1986
Bounagaea Meklat et al. 2015
Crossiella Labeda 2001
Gandjariella Ningsih et al. 2019
Goodfellowiella Labeda et al. 2008
Haloactinomyces Lai et al. 2017
Haloechinothrix Tang et al. 2010
Halopolyspora Lai et al. 2014
Halosaccharopolyspora Teo et al. 2021
Herbihabitans Zhang et al. 2016
Kibdelosporangium Shearer et al. 1986
Kutzneria Stackebrandt et al. 1994
Labedaea Lee 2012
Lentzea Yassin et al. 1995
Longimycelium Xia et al. 2013
Prauserella Kim and Goodfellow 1999
Pseudonocardia Henssen 1957
Qaidamihabitans Tian et al. 2022
Saccharomonospora Nonomura and Ohara 1971
Saccharopolyspora Lacey and Goodfellow 1975
Saccharothrix Labeda et al. 1984
Salinifilum Moshtaghi Nikou et al. 2017
Sciscionella Tian et al. 2009
Solihabitans Jin et al. 2022
Streptoalloteichus (ex Tomita et al. 1978) Tomita et al. 1987
Tamaricihabitans Qin et al. 2015
Thermocrispum Korn-Wendisch et al. 1995
Thermotunica Wu et al. 2014
Umezawaea Labeda and Kroppenstedt 2007
Ruaniales Salam et al. 2020
Ruaniaceae Tang et al. 2010
Occultella Schumann et al. 2021
Ruania Gu et al. 2007
Sporichthyales Nouioui et al. 2018
Sporichthyaceae Rainey et al. 1997
Longivirga Qu et al. 2018
Sporichthya Lechevalier et al. 1968
Streptomycetales Cavalier-Smith 2002
Allostreptomycetaceae Salam et al. 2020
Allostreptomyces Huang et al. 2017
Streptomycetaceae Waksman and Henrici 1943
Actinacidiphila Madhaiyan et al. 2022
Embleya Nouioui et al. 2018
Kitasatospora Omura et al. 1983
Mangrovactinospora Madhaiyan et al. 2022
Peterkaempfera Madhaiyan et al. 2022
Phaeacidiphilus Madhaiyan et al. 2022
Streptacidiphilus Kim et al. 2003
Streptantibioticus Madhaiyan et al. 2022
Streptomyces Waksman and Henrici 1943
Wenjunlia Madhaiyan et al. 2022
Yinghuangia Nouioui et al. 2018
Streptosporangiales Goodfellow 2015
Nocardiopsaceae Rainey et al. 1996
Actinorugispora Liu et al. 2015
Allonocardiopsis Du et al. 2013
Allosalinactinospora Guo et al. 2015
Haloactinospora Tang et al. 2008
Lipingzhangella Zhang et al. 2016
Marinactinospora Tian et al. 2009
Marinitenerispora Ng et al. 2019
Murinocardiopsis Kämpfer et al. 2010
Nocardiopsis (Brocq-Rousseau 1904) Meyer 1976
Salinactinospora Chang et al. 2012
Spinactinospora Chang et al. 2011
Spiractinospora Claverías et al. 2022
Streptomonospora Cui et al. 2001
Thermobifida Zhang et al. 1998
Streptosporangiaceae Goodfellow et al. 1990
Acrocarpospora Tamura et al. 2000
Bailinhaonella Feng et al. 2019
Herbidospora Kudo et al. 1993
Microbispora Nonomura and Ohara 1957
Microtetraspora Thiemann et al. 1968
Nonomuraea Zhang et al. 1998
Planobispora Thiemann and Beretta 1968
Planomonospora Thiemann et al. 1967
Planotetraspora Runmao et al. 1993
Rhizohabitans Yamada et al. 2023
Sinosporangium Zhang et al. 2011
Sphaerimonospora Mingma et al. 2016
Sphaerisporangium Ara and Kudo 2007
Spongiactinospora Li et al. 2019
Streptosporangium Couch 1955
Thermoactinospora Zhou et al. 2012
Thermocatellispora Zhou et al. 2012
Thermopolyspora (ex Krasil'nikov and Agre 1964) Goodfellow et al. 2005
Thermostaphylospora Wu et al. 2018
Thermobispora Wang et al. 1996
Thermomonosporaceae Rainey et al. 1997
Actinoallomurus Tamura et al. 2009
Actinocorallia Iinuma et al. 1994
Actinomadura Lechevalier and Lechevalier 1970
Spirillospora Couch 1963
Thermomonospora Henssen 1957
Treboniaceae Rapoport et al. 2020
Trebonia Rapoport et al. 2020
Data type count
  • 0
    Genome
  • 0
    16S rRNA